import jalview.datamodel.*;
/**
- * DOCUMENT ME!
+ * Parser for the JPred/JNet concise format. This is a series of CSV lines,
+ * each line is either a sequence (QUERY), a sequence profile (align;), or
+ * jnet prediction annotation (anything else).
+ * Automagic translation happens for annotation called 'JNETPRED' (translated to Secondary Structure Prediction), or 'JNETCONF' (translates to 'Prediction Confidence').
+ * Numeric scores are differentiated from symbolic by being parseable into a float vector. They are put in Scores.
+ * Symscores gets the others.
+ * JNetAnnotationMaker translates the data parsed by this object into annotation on an alignment.
*
- * @author $author$
+ * @author jprocter
* @version $Revision$
*/
public class JPredFile