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Merge branch 'releases/Release_2_11_3_Branch'
[jalview.git]
/
src
/
jalview
/
io
/
MSFfile.java
diff --git
a/src/jalview/io/MSFfile.java
b/src/jalview/io/MSFfile.java
index
158feb9
..
ed7049e
100755
(executable)
--- a/
src/jalview/io/MSFfile.java
+++ b/
src/jalview/io/MSFfile.java
@@
-136,7
+136,7
@@
public class MSFfile extends AlignFile
}
} catch (IOException e)
{
}
} catch (IOException e)
{
- System.err.println("Exception parsing MSFFile " + e);
+ jalview.bin.Console.errPrintln("Exception parsing MSFFile " + e);
e.printStackTrace();
}
e.printStackTrace();
}
@@
-169,8
+169,9
@@
public class MSFfile extends AlignFile
}
else
{
}
else
{
- System.err.println("MSFFile Parser: Can't find sequence for "
- + headers.get(i));
+ jalview.bin.Console
+ .errPrintln("MSFFile Parser: Can't find sequence for "
+ + headers.get(i));
}
}
}
}
}
}
@@
-200,7
+201,8
@@
public class MSFfile extends AlignFile
}
} catch (Exception e)
{
}
} catch (Exception e)
{
- System.err.println("Exception during MSF Checksum calculation");
+ jalview.bin.Console
+ .errPrintln("Exception during MSF Checksum calculation");
e.printStackTrace();
}
}
e.printStackTrace();
}
}