Merge branch 'develop' into spike/JAL-4047/JAL-4048_columns_in_sequenceID

[jalview.git] / src / jalview / io / PContactPredictionFile.java

diff --git a/src/jalview/io/PContactPredictionFile.java b/src/jalview/io/PContactPredictionFile.java
index 3df9804..164d7cc 100644 (file)
--- a/src/jalview/io/PContactPredictionFile.java
+++ b/src/jalview/io/PContactPredictionFile.java
@@ -47,8 +47,8 @@ public class PContactPredictionFile extends AlignFile
 {
   protected static final String CONTACT_PREDICTION = "CONTACT_PREDICTION";
 
-  public PContactPredictionFile(String inFile, DataSourceType fileSourceType)
-          throws IOException
+  public PContactPredictionFile(String inFile,
+          DataSourceType fileSourceType) throws IOException
   {
     super(inFile, fileSourceType);
 
@@ -109,19 +109,23 @@ public class PContactPredictionFile extends AlignFile
 
         if (cm == null)
         {
-          cm = new ContactMatrix(true) {
+          cm = new ContactMatrix(true)
+          {
             @Override
             public String getType()
             {
               return CONTACT_PREDICTION;
             }
+
             @Override
             public int getHeight()
             {
               // TODO Auto-generated method stub
-              // return maximum contact height 
+              // return maximum contact height
               return 0;
-            }@Override
+            }
+
+            @Override
             public int getWidth()
             {
               // TODO Auto-generated method stub
@@ -140,15 +144,15 @@ public class PContactPredictionFile extends AlignFile
         } catch (Exception x)
         {
           error = true;
-          errormessage = "Couldn't process line: "
-                  + x.getLocalizedMessage() + "\n" + line;
+          errormessage = "Couldn't process line: " + x.getLocalizedMessage()
+                  + "\n" + line;
           return;
         }
         cm.addContact(left, right, (float) strength);
       }
     }
     // TODO COMPLETE
-    throw(new Error("Not Implemented yet."));
+    throw (new Error("Not Implemented yet."));
   }
 
   @Override