Merge branch 'documentation/JAL-2675_release2102b1' into feature/JAL-2611

[jalview.git] / src / jalview / io / SimpleBlastFile.java

diff --git a/src/jalview/io/SimpleBlastFile.java b/src/jalview/io/SimpleBlastFile.java
index 1b72545..ba6b2f3 100644 (file)
--- a/src/jalview/io/SimpleBlastFile.java
+++ b/src/jalview/io/SimpleBlastFile.java
@@ -165,8 +165,8 @@ public class SimpleBlastFile extends AlignFile
               rstart = Long.parseLong(stindx);
             } catch (Exception e)
             {
-              System.err.println("Couldn't parse '" + stindx
-                      + "' as start of row");
+              System.err.println(
+                      "Couldn't parse '" + stindx + "' as start of row");
               // inAlignments = false;
               // warn for this line
             }
@@ -175,8 +175,8 @@ public class SimpleBlastFile extends AlignFile
               rend = Long.parseLong(endindx);
             } catch (Exception e)
             {
-              System.err.println("Couldn't parse '" + endindx
-                      + "' as end of row");
+              System.err.println(
+                      "Couldn't parse '" + endindx + "' as end of row");
               // inAlignments = false;
 
               // warn for this line
@@ -204,7 +204,8 @@ public class SimpleBlastFile extends AlignFile
             {
               padseq = true; // prepend gaps to new sequences in this block
               seqentry = new Object[] { new StringBuffer(),
-                  new long[] { rstart, rend } };
+                  new long[]
+                  { rstart, rend } };
               seqentries.addElement(seqentry);
               seqhash.put(sqid, seqentry);
 
@@ -258,7 +259,7 @@ public class SimpleBlastFile extends AlignFile
         {
           Sequence newseq = new Sequence(idstring,
 
-          ((StringBuffer) seqentry[0]).toString(),
+                  ((StringBuffer) seqentry[0]).toString(),
                   (int) ((long[]) seqentry[1])[0],
                   (int) ((long[]) seqentry[1])[1]);
           if (newseq.getEnd() == 0)