JAL-2598 Sequence.getSequence return a copy of the char array

[jalview.git] / src / jalview / io / StockholmFile.java

diff --git a/src/jalview/io/StockholmFile.java b/src/jalview/io/StockholmFile.java
index 936d2b9..798a77e 100644 (file)
--- a/src/jalview/io/StockholmFile.java
+++ b/src/jalview/io/StockholmFile.java
@@ -930,10 +930,7 @@ public class StockholmFile extends AlignFile
     while ((in < s.length) && (s[in] != null))
     {
       String tmp = printId(s[in], jvSuffix);
-      if (s[in].getSequence().length > max)
-      {
-        max = s[in].getSequence().length;
-      }
+      max = Math.max(max, s[in].getLength());
 
       if (tmp.length() > maxid)
       {