FileParse object can be re-used to read different files concatenated together

[jalview.git] / src / jalview / io / StockholmFile.java

diff --git a/src/jalview/io/StockholmFile.java b/src/jalview/io/StockholmFile.java
index 945b8c5..d5f3cc2 100644 (file)
--- a/src/jalview/io/StockholmFile.java
+++ b/src/jalview/io/StockholmFile.java
@@ -53,7 +53,10 @@ public class StockholmFile extends AlignFile
   {\r
     super(inFile, type);\r
   }\r
-\r
+  public StockholmFile(FileParse source) throws IOException\r
+  {\r
+    super(source);\r
+  }\r
   public void initData()\r
   {\r
     super.initData();\r
@@ -221,6 +224,7 @@ public class StockholmFile extends AlignFile
           // + ": " + seq);\r
           this.seqs.addElement(seqO);\r
         }\r
+        return; // finished parsing this segment of source\r
       }\r
       else if (!r.search(line))\r
       {\r