Merge branch 'develop' into spike/JAL-4047/JAL-4048_columns_in_sequenceID

[jalview.git] / src / jalview / io / WSWUBlastClient.java

diff --git a/src/jalview/io/WSWUBlastClient.java b/src/jalview/io/WSWUBlastClient.java
index 63b78b2..c7c90f4 100755 (executable)
--- a/src/jalview/io/WSWUBlastClient.java
+++ b/src/jalview/io/WSWUBlastClient.java
@@ -84,7 +84,7 @@ public class WSWUBlastClient
     for (int i = 0; i < ids.size(); i++)
     {
       Sequence sequence = (Sequence) ids.get(i);
-      System.out.println(sequence.getName());
+      jalview.bin.Console.outPrintln(sequence.getName());
 
       BlastThread thread = new BlastThread(sequence);
       thread.start();
@@ -249,7 +249,7 @@ public class WSWUBlastClient
 
     BlastThread(Sequence sequence)
     {
-      System.out.println("blasting for: " + sequence.getName());
+      jalview.bin.Console.outPrintln("blasting for: " + sequence.getName());
       this.sequence = sequence;
     }
 
@@ -276,7 +276,7 @@ public class WSWUBlastClient
           else
           {
             Thread.sleep(10000);
-            System.out.println("WSWuBlastClient: I'm alive "
+            jalview.bin.Console.outPrintln("WSWuBlastClient: I'm alive "
                     + sequence.getName() + " " + jobid); // log.debug
           }
         } catch (Exception ex)
@@ -315,7 +315,7 @@ public class WSWUBlastClient
       {
         jobComplete = true;
         jobsRunning--;
-        System.err.println("WSWUBlastClient error:\n" + exp.toString());
+        jalview.bin.Console.errPrintln("WSWUBlastClient error:\n" + exp.toString());
         exp.printStackTrace();
       }
     }