Merge branch 'develop' into features/JAL-2446NCList

[jalview.git] / src / jalview / io / gff / GffHelperBase.java

diff --git a/src/jalview/io/gff/GffHelperBase.java b/src/jalview/io/gff/GffHelperBase.java
index 41f141b..1d4d3ac 100644 (file)
--- a/src/jalview/io/gff/GffHelperBase.java
+++ b/src/jalview/io/gff/GffHelperBase.java
@@ -150,8 +150,8 @@ public abstract class GffHelperBase implements GffHelperI
        * restrict from range to make them match up
        * it's kind of arbitrary which end we truncate - here it is the end
        */
-      System.err.print("Truncating mapping from " + Arrays.toString(from)
-              + " to ");
+      System.err.print(
+              "Truncating mapping from " + Arrays.toString(from) + " to ");
       if (from[1] > from[0])
       {
         from[1] -= fromOverlap / toRatio;
@@ -169,8 +169,8 @@ public abstract class GffHelperBase implements GffHelperI
       /*
        * restrict to range to make them match up
        */
-      System.err.print("Truncating mapping to " + Arrays.toString(to)
-              + " to ");
+      System.err.print(
+              "Truncating mapping to " + Arrays.toString(to) + " to ");
       if (to[1] > to[0])
       {
         to[1] -= fromOverlap / fromRatio;
@@ -261,7 +261,8 @@ public abstract class GffHelperBase implements GffHelperI
   /**
    * Parses the input line to a map of name / value(s) pairs. For example the
    * line <br>
-   * Notes=Fe-S;Method=manual curation, prediction; source = Pfam; Notes = Metal <br>
+   * Notes=Fe-S;Method=manual curation, prediction; source = Pfam; Notes = Metal
+   * <br>
    * if parsed with delimiter=";" and separators {' ', '='} <br>
    * would return a map with { Notes={Fe=S, Metal}, Method={manual curation,
    * prediction}, source={Pfam}} <br>
@@ -388,8 +389,8 @@ public abstract class GffHelperBase implements GffHelperI
          */
         for (Entry<String, List<String>> attr : attributes.entrySet())
         {
-          String values = StringUtils.listToDelimitedString(
-                  attr.getValue(), ",");
+          String values = StringUtils.listToDelimitedString(attr.getValue(),
+                  ",");
           sf.setValue(attr.getKey(), values);
           if (NOTE.equals(attr.getKey()))
           {