JAL-3541 selectively merged build.gradle and gradle.properties

[jalview.git] / src / jalview / io / vamsas / Datasetsequence.java

diff --git a/src/jalview/io/vamsas/Datasetsequence.java b/src/jalview/io/vamsas/Datasetsequence.java
index a399c04..d24e947 100644 (file)
--- a/src/jalview/io/vamsas/Datasetsequence.java
+++ b/src/jalview/io/vamsas/Datasetsequence.java
@@ -180,13 +180,13 @@ public class Datasetsequence extends DatastoreItem
     if (sq.getDatasetSequence() == null && sq.getDBRefs() != null)
     {
       // only sync database references for dataset sequences
-      DBRefEntry[] entries = sq.getDBRefs();
+      List<DBRefEntry> entries = sq.getDBRefs();
       // jalview.datamodel.DBRefEntry dbentry;
-      for (int db = 0; db < entries.length; db++)
+      for (int db = 0, dn = entries.size(); db < dn; db++)
       {
         modifiedthedoc |= new jalview.io.vamsas.Dbref(datastore,
                 // dbentry =
-                entries[db], sq, (Sequence) vobj, dataset).docWasUpdated();
+                entries.get(db), sq, (Sequence) vobj, dataset).docWasUpdated();
 
       }