JAL-1807 explicit imports (jalview.io.*)

[jalview.git] / src / jalview / io / vamsas / Rangetype.java

diff --git a/src/jalview/io/vamsas/Rangetype.java b/src/jalview/io/vamsas/Rangetype.java
index 08b1b52..64a07e1 100644 (file)
--- a/src/jalview/io/vamsas/Rangetype.java
+++ b/src/jalview/io/vamsas/Rangetype.java
@@ -20,7 +20,9 @@
  */
 package jalview.io.vamsas;
 
+import jalview.bin.Cache;
 import jalview.io.VamsasAppDatastore;
+import jalview.util.MapList;
 import jalview.util.MessageManager;
 
 import java.util.List;
@@ -246,26 +248,26 @@ public abstract class Rangetype extends DatastoreItem
    * @param default unit for mapped
    * @return MapList
    */
-  protected jalview.util.MapList parsemapType(MapType maprange, int localu,
+  protected MapList parsemapType(MapType maprange, int localu,
           int mappedu)
   {
-    jalview.util.MapList ml = null;
+    MapList ml = null;
     int[] localRange = getIntervals(maprange.getLocal());
     int[] mappedRange = getIntervals(maprange.getMapped());
     long lu = maprange.getLocal().hasUnit() ? maprange.getLocal().getUnit()
             : localu;
     long mu = maprange.getMapped().hasUnit() ? maprange.getMapped()
             .getUnit() : mappedu;
-    ml = new jalview.util.MapList(localRange, mappedRange, (int) lu,
+    ml = new MapList(localRange, mappedRange, (int) lu,
             (int) mu);
     return ml;
   }
 
-  protected jalview.util.MapList parsemapType(MapType map)
+  protected MapList parsemapType(MapType map)
   {
     if (!map.getLocal().hasUnit() || map.getMapped().hasUnit())
     {
-      jalview.bin.Cache.log
+      Cache.log
               .warn("using default mapping length of 1:1 for map "
                       + (map.isRegistered() ? map.getVorbaId().toString()
                               : ("<no Id registered> " + map.toString())));
@@ -280,7 +282,7 @@ public abstract class Rangetype extends DatastoreItem
    * @param ml
    * @param setUnits
    */
-  protected void initMapType(MapType maprange, jalview.util.MapList ml,
+  protected void initMapType(MapType maprange, MapList ml,
           boolean setUnits)
   {
     initMapType(maprange, ml, setUnits, false);
@@ -294,7 +296,7 @@ public abstract class Rangetype extends DatastoreItem
    * @param reverse
    *          - reverse MapList mapping for Local and Mapped ranges and units
    */
-  protected void initMapType(MapType maprange, jalview.util.MapList ml,
+  protected void initMapType(MapType maprange, MapList ml,
           boolean setUnits, boolean reverse)
   {
     if (ml == null)