}
}
+ @Override
public void addToDocument()
{
add(mjvmapping, from, ds);
}
+ @Override
public void addFromDocument()
{
add((SequenceMapping) vobj);
}
+ @Override
public void conflict()
{
conflict(mjvmapping, (SequenceMapping) vobj);
}
+ @Override
public void updateToDoc()
{
update(mjvmapping, (SequenceMapping) vobj);
}
+ @Override
public void updateFromDoc()
{
update((SequenceMapping) vobj, (jalview.datamodel.Mapping) jvobj);
acf.addMap(from, to, mapping);
}
bindjvvobj(mapping, sequenceMapping);
- jalview.structure.StructureSelectionManager
- .getStructureSelectionManager(Desktop.instance)
+ Desktop.getStructureSelectionManager()
.registerMapping(acf);
// Try to link up any conjugate database references in the two sequences
// matchConjugateDBRefs(from, to, mapping);
+ from.getName() + " and " + to.getName());
}
List<DBRefEntry> fdb = from.getDBRefs();
- List<DBRefEntry> tdb = new ArrayList<DBRefEntry>(to.getDBRefs());
+ List<DBRefEntry> tdb = new ArrayList<>(to.getDBRefs());
int tdblen = to.getDBRefs().size();
//
//