JAL-1260 source formatting according to utils/eclipse/JalviewCodeStyle.xml

[jalview.git] / src / jalview / io / xdb / genbank / GenBankLocations.java

diff --git a/src/jalview/io/xdb/genbank/GenBankLocations.java b/src/jalview/io/xdb/genbank/GenBankLocations.java
index ae3e47b..7281703 100644 (file)
--- a/src/jalview/io/xdb/genbank/GenBankLocations.java
+++ b/src/jalview/io/xdb/genbank/GenBankLocations.java
@@ -1,98 +1,127 @@
 package jalview.io.xdb.genbank;
 
 /**
- *
+ * 
  * @author Dieval Guizelini
  */
-public class GenBankLocations extends GenBankLocation {
-    public static final int NONE = 1; // default
-    public static final int COMPLEMENT = 2;
-    public static final int JOIN = 3;
-    public static final int ORDER = 4; // conj com ordem desconhecida
-    private int operator = NONE;
-    private java.util.List<GenBankLocation> units;
-
-    public GenBankLocations() {
-        units = new java.util.ArrayList<GenBankLocation>();
-    }
+public class GenBankLocations extends GenBankLocation
+{
+  public static final int NONE = 1; // default
 
-    @Override
-    public void setComplement(boolean complement){
-        super.setComplement(complement);
-        this.operator = COMPLEMENT;
-        if (units != null) {
-            for (GenBankLocation o : units) {
-                o.setComplement(complement);
-            }
-        }
-    }
+  public static final int COMPLEMENT = 2;
 
-    @Override
-    public String toString() {
-        StringBuilder sb = new StringBuilder();
-        if (getOperator() == COMPLEMENT) {
-            sb.append("complement(");
-        } else if (getOperator() == JOIN) {
-            sb.append("join(");
-        } else if (getOperator() == ORDER) {
-            sb.append("order(");
-        }
-        if (units.size() > 0) {
-            sb.append(units.get(0).toString());
-            for (int i = 1; i < units.size(); i++) {
-                sb.append(",");
-                sb.append(units.get(i).toString());
-            }
-        }
-        if (getOperator() != NONE) {
-            sb.append(")");
-        }
-        return sb.toString();
-    }
+  public static final int JOIN = 3;
 
-    /**
-     * @return the units
-     */
-    public java.util.List<GenBankLocation> getUnits() {
-        return units;
-    }
+  public static final int ORDER = 4; // conj com ordem desconhecida
 
-    /**
-     * @param units the units to set
-     */
-    public void setUnits(java.util.List<GenBankLocation> units) {
-        this.units = units;
-    }
+  private int operator = NONE;
+
+  private java.util.List<GenBankLocation> units;
 
-    @Override
-    public int getMinor() {
-        if( units.size() > 0 ) {
-            return units.get(0).getMinor();
-        }
-        return 0;
+  public GenBankLocations()
+  {
+    units = new java.util.ArrayList<GenBankLocation>();
+  }
+
+  @Override
+  public void setComplement(boolean complement)
+  {
+    super.setComplement(complement);
+    this.operator = COMPLEMENT;
+    if (units != null)
+    {
+      for (GenBankLocation o : units)
+      {
+        o.setComplement(complement);
+      }
     }
+  }
 
-    @Override
-    public int getMajor() {
-        int ind = units.size();
-        if( ind > 0 ) {
-            return units.get(ind-1).getMajor();
-        }
-        return 0;
+  @Override
+  public String toString()
+  {
+    StringBuilder sb = new StringBuilder();
+    if (getOperator() == COMPLEMENT)
+    {
+      sb.append("complement(");
+    }
+    else if (getOperator() == JOIN)
+    {
+      sb.append("join(");
     }
+    else if (getOperator() == ORDER)
+    {
+      sb.append("order(");
+    }
+    if (units.size() > 0)
+    {
+      sb.append(units.get(0).toString());
+      for (int i = 1; i < units.size(); i++)
+      {
+        sb.append(",");
+        sb.append(units.get(i).toString());
+      }
+    }
+    if (getOperator() != NONE)
+    {
+      sb.append(")");
+    }
+    return sb.toString();
+  }
+
+  /**
+   * @return the units
+   */
+  public java.util.List<GenBankLocation> getUnits()
+  {
+    return units;
+  }
 
-    /**
-     * @return the operator
-     */
-    public int getOperator() {
-        return operator;
+  /**
+   * @param units
+   *          the units to set
+   */
+  public void setUnits(java.util.List<GenBankLocation> units)
+  {
+    this.units = units;
+  }
+
+  @Override
+  public int getMinor()
+  {
+    if (units.size() > 0)
+    {
+      return units.get(0).getMinor();
     }
+    return 0;
+  }
 
-    /**
-     * @param operator the operator to set
-     */
-    public void setOperator(int operator) {
-        this.operator = operator;
+  @Override
+  public int getMajor()
+  {
+    int ind = units.size();
+    if (ind > 0)
+    {
+      return units.get(ind - 1).getMajor();
     }
+    return 0;
+  }
+
+  /**
+   * @return the operator
+   */
+  public int getOperator()
+  {
+    return operator;
+  }
+
+  /**
+   * @param operator
+   *          the operator to set
+   */
+  public void setOperator(int operator)
+  {
+    this.operator = operator;
+  }
 
 }