package jalview.io.xdb.genbank;
-public class GenBankReference {
- private int order;
- private int begin;
- private int end;
- private String descriptor;
- private String authors;
- private String title;
- private String journal;
- private String pubmed;
- private String medline;
- private String consortia;
- private String remark;
-
- public GenBankReference() {
- super();
- }
-
- public String getDescriptor() {
- return descriptor;
- }
-
- public void setDescriptor(String descriptor) {
- this.descriptor = descriptor;
- }
-
- public String getAuthors() {
- return authors;
- }
-
- public void setAuthors(String authors) {
- this.authors = authors;
- }
-
- public String getTitle() {
- return title;
- }
-
- public void setTitle(String title) {
- this.title = title;
- }
-
- public String getJournal() {
- return journal;
- }
-
- public void setJournal(String journal) {
- this.journal = journal;
- }
-
- public String getPubmed() {
- return pubmed;
- }
-
- public void setPubmed(String pubmed) {
- this.pubmed = pubmed;
- }
-
- public int getOrder() {
- return order;
- }
-
- public void setOrder(int order) {
- this.order = order;
- }
- public int getBegin() {
- return begin;
- }
-
- public void setBegin(int begin) {
- this.begin = begin;
- }
-
- public int getEnd() {
- return end;
- }
-
- public void setEnd(int end) {
- this.end = end;
- }
-
-
- public String getMedline() {
- return medline;
- }
-
- public void setMedline(String medline) {
- this.medline = medline;
- }
-
- public String getConsortia() {
- return consortia;
- }
-
- public void setConsortia(String consortia) {
- this.consortia = consortia;
- }
-
- public String getRemark() {
- return remark;
- }
-
- public void setRemark(String remark) {
- this.remark = remark;
- }
-
- public String toString(){
-// References has the following format
-// REFERENCE 1 (bases 1 to 1976)
-// AUTHORS Spritz,R.A., DeRiel,J.K., Forget,B.G. and Weissman,S.M.
-// TITLE Complete nucleotide sequence of the human delta-globin gene
-// JOURNAL Cell 21 (3), 639-646 (1980)
-// PUBMED 7438204
-
- StringBuffer buf = new StringBuffer();
- buf.append("REFERENCE ").append(this.getOrder()).append(" (bases ").append(this.getBegin()).append(" to ").append(this.getEnd()).append(")\n");
- if (this.getAuthors()!=null)
- buf.append(" AUTHORS ").append(this.getAuthors()).append("\n");
- if (this.getTitle()!=null)
- buf.append(" TITLE ").append(this.getTitle()).append("\n");
- if (this.getJournal()!=null)
- buf.append(" JOURNAL ").append(this.getJournal()).append("\n");
- if (this.getPubmed()!=null)
- buf.append(" PUBMED ").append(this.getPubmed()).append("\n");;
- if (this.getMedline()!=null)
- buf.append(" MEDLINE ").append(this.getMedline()).append("\n");;
- if (this.getRemark()!=null)
- buf.append(" REMARK ").append(this.getRemark()).append("\n");;
- if (this.getConsortia()!=null)
- buf.append(" CONSRTM ").append(this.getConsortia()).append("\n");;
- return buf.toString();
- }
-
+public class GenBankReference
+{
+ private int order;
+
+ private int begin;
+
+ private int end;
+
+ private String descriptor;
+
+ private String authors;
+
+ private String title;
+
+ private String journal;
+
+ private String pubmed;
+
+ private String medline;
+
+ private String consortia;
+
+ private String remark;
+
+ public GenBankReference()
+ {
+ super();
+ }
+
+ public String getDescriptor()
+ {
+ return descriptor;
+ }
+
+ public void setDescriptor(String descriptor)
+ {
+ this.descriptor = descriptor;
+ }
+
+ public String getAuthors()
+ {
+ return authors;
+ }
+
+ public void setAuthors(String authors)
+ {
+ this.authors = authors;
+ }
+
+ public String getTitle()
+ {
+ return title;
+ }
+
+ public void setTitle(String title)
+ {
+ this.title = title;
+ }
+
+ public String getJournal()
+ {
+ return journal;
+ }
+
+ public void setJournal(String journal)
+ {
+ this.journal = journal;
+ }
+
+ public String getPubmed()
+ {
+ return pubmed;
+ }
+
+ public void setPubmed(String pubmed)
+ {
+ this.pubmed = pubmed;
+ }
+
+ public int getOrder()
+ {
+ return order;
+ }
+
+ public void setOrder(int order)
+ {
+ this.order = order;
+ }
+
+ public int getBegin()
+ {
+ return begin;
+ }
+
+ public void setBegin(int begin)
+ {
+ this.begin = begin;
+ }
+
+ public int getEnd()
+ {
+ return end;
+ }
+
+ public void setEnd(int end)
+ {
+ this.end = end;
+ }
+
+ public String getMedline()
+ {
+ return medline;
+ }
+
+ public void setMedline(String medline)
+ {
+ this.medline = medline;
+ }
+
+ public String getConsortia()
+ {
+ return consortia;
+ }
+
+ public void setConsortia(String consortia)
+ {
+ this.consortia = consortia;
+ }
+
+ public String getRemark()
+ {
+ return remark;
+ }
+
+ public void setRemark(String remark)
+ {
+ this.remark = remark;
+ }
+
+ public String toString()
+ {
+ // References has the following format
+ // REFERENCE 1 (bases 1 to 1976)
+ // AUTHORS Spritz,R.A., DeRiel,J.K., Forget,B.G. and Weissman,S.M.
+ // TITLE Complete nucleotide sequence of the human delta-globin gene
+ // JOURNAL Cell 21 (3), 639-646 (1980)
+ // PUBMED 7438204
+
+ StringBuffer buf = new StringBuffer();
+ buf.append("REFERENCE ").append(this.getOrder()).append(" (bases ")
+ .append(this.getBegin()).append(" to ").append(this.getEnd())
+ .append(")\n");
+ if (this.getAuthors() != null)
+ buf.append(" AUTHORS ").append(this.getAuthors()).append("\n");
+ if (this.getTitle() != null)
+ buf.append(" TITLE ").append(this.getTitle()).append("\n");
+ if (this.getJournal() != null)
+ buf.append(" JOURNAL ").append(this.getJournal()).append("\n");
+ if (this.getPubmed() != null)
+ buf.append(" PUBMED ").append(this.getPubmed()).append("\n");
+ ;
+ if (this.getMedline() != null)
+ buf.append(" MEDLINE ").append(this.getMedline()).append("\n");
+ ;
+ if (this.getRemark() != null)
+ buf.append(" REMARK ").append(this.getRemark()).append("\n");
+ ;
+ if (this.getConsortia() != null)
+ buf.append(" CONSRTM ").append(this.getConsortia()).append("\n");
+ ;
+ return buf.toString();
+ }
+
}
git://source.jalview.org / jalview.git / blobdiff