JAL-2383 restore PID colour threshold from project; enable/disable

[jalview.git] / src / jalview / jbgui / GAlignFrame.java

diff --git a/src/jalview/jbgui/GAlignFrame.java b/src/jalview/jbgui/GAlignFrame.java
index dc17397..6530d3d 100755 (executable)
--- a/src/jalview/jbgui/GAlignFrame.java
+++ b/src/jalview/jbgui/GAlignFrame.java
@@ -155,6 +155,8 @@ public class GAlignFrame extends JInternalFrame
 
   protected JMenuItem modifyConservation = new JMenuItem();
 
+  protected JMenuItem modifyPID = new JMenuItem();
+
   protected JMenu sortByTreeMenu = new JMenu();
 
   protected JMenu sort = new JMenu();
@@ -1118,7 +1120,7 @@ public class GAlignFrame extends JInternalFrame
       @Override
       public void actionPerformed(ActionEvent e)
       {
-        conservationMenuItem_actionPerformed(e);
+        conservationMenuItem_actionPerformed();
       }
     });
     noColourmenuItem.setText(MessageManager.getString("label.none"));
@@ -1189,7 +1191,7 @@ public class GAlignFrame extends JInternalFrame
       @Override
       public void actionPerformed(ActionEvent e)
       {
-        abovePIDThreshold_actionPerformed(e);
+        abovePIDThreshold_actionPerformed();
       }
     });
     showSeqFeatures.setText(MessageManager
@@ -1604,14 +1606,14 @@ public class GAlignFrame extends JInternalFrame
 
     });
 
-    JMenuItem modifyPID = new JMenuItem(
+    modifyPID = new JMenuItem(
             MessageManager.getString("label.modify_identity_threshold"));
     modifyPID.addActionListener(new ActionListener()
     {
       @Override
       public void actionPerformed(ActionEvent e)
       {
-        modifyPID_actionPerformed(e);
+        modifyPID_actionPerformed();
       }
     });
     modifyConservation.setText(MessageManager
@@ -1621,7 +1623,7 @@ public class GAlignFrame extends JInternalFrame
       @Override
       public void actionPerformed(ActionEvent e)
       {
-        modifyConservation_actionPerformed(e);
+        modifyConservation_actionPerformed();
       }
     });
     sortByTreeMenu
@@ -2817,7 +2819,7 @@ public class GAlignFrame extends JInternalFrame
   {
   }
 
-  protected void conservationMenuItem_actionPerformed(ActionEvent e)
+  protected void conservationMenuItem_actionPerformed()
   {
   }
 
@@ -2833,7 +2835,7 @@ public class GAlignFrame extends JInternalFrame
   {
   }
 
-  protected void abovePIDThreshold_actionPerformed(ActionEvent e)
+  protected void abovePIDThreshold_actionPerformed()
   {
   }
 
@@ -2954,11 +2956,11 @@ public class GAlignFrame extends JInternalFrame
   {
   }
 
-  protected void modifyPID_actionPerformed(ActionEvent e)
+  protected void modifyPID_actionPerformed()
   {
   }
 
-  protected void modifyConservation_actionPerformed(ActionEvent e)
+  protected void modifyConservation_actionPerformed()
   {
   }