Merge branch 'JAL-1013_pca_rna_dna' into develop

[jalview.git] / src / jalview / jbgui / GPCAPanel.java

diff --git a/src/jalview/jbgui/GPCAPanel.java b/src/jalview/jbgui/GPCAPanel.java
index 62234bf..72cb5cd 100755 (executable)
--- a/src/jalview/jbgui/GPCAPanel.java
+++ b/src/jalview/jbgui/GPCAPanel.java
@@ -71,6 +71,9 @@ public class GPCAPanel extends JInternalFrame
 
   protected JMenu associateViewsMenu = new JMenu();
 
+  protected JMenu calcSettings=new JMenu();
+  protected JCheckBoxMenuItem nuclSetting=new JCheckBoxMenuItem();
+  protected JCheckBoxMenuItem protSetting=new JCheckBoxMenuItem();
   public GPCAPanel()
   {
     try
@@ -218,6 +221,30 @@ public class GPCAPanel extends JInternalFrame
       }
     });
     associateViewsMenu.setText("Associate Nodes With");
+    calcSettings.setText("Change Parameters");
+    nuclSetting.setText("Nucleotide matrix");
+    protSetting.setText("Protein matrix");
+    nuclSetting.addActionListener(new ActionListener()
+    {
+      
+      @Override
+      public void actionPerformed(ActionEvent arg0)
+      {
+        nuclSetting_actionPerfomed(arg0);
+      }
+    });
+    protSetting.addActionListener(new ActionListener()
+    {
+      
+      @Override
+      public void actionPerformed(ActionEvent arg0)
+      {
+        protSetting_actionPerfomed(arg0);
+      }
+    });calcSettings.add(nuclSetting);
+    calcSettings.add(protSetting);
+    
+    
     this.getContentPane().add(jPanel2, BorderLayout.SOUTH);
     jPanel2.add(jLabel1, null);
     jPanel2.add(xCombobox, null);
@@ -227,6 +254,7 @@ public class GPCAPanel extends JInternalFrame
     jPanel2.add(zCombobox, null);
     jMenuBar1.add(fileMenu);
     jMenuBar1.add(viewMenu);
+    jMenuBar1.add(calcSettings);
     fileMenu.add(saveMenu);
     fileMenu.add(outputValues);
     fileMenu.add(print);
@@ -240,6 +268,18 @@ public class GPCAPanel extends JInternalFrame
     viewMenu.add(associateViewsMenu);
   }
 
+  protected void protSetting_actionPerfomed(ActionEvent arg0)
+  {
+    // TODO Auto-generated method stub
+    
+  }
+
+  protected void nuclSetting_actionPerfomed(ActionEvent arg0)
+  {
+    // TODO Auto-generated method stub
+    
+  }
+
   protected void outputPoints_actionPerformed(ActionEvent e)
   {
     // TODO Auto-generated method stub