Formatting changes
[jalview.git] / src / jalview / jbgui / GTreePanel.java
index 088dbde..24e80b6 100755 (executable)
 /*\r
-* Jalview - A Sequence Alignment Editor and Viewer\r
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
-*\r
-* This program is free software; you can redistribute it and/or\r
-* modify it under the terms of the GNU General Public License\r
-* as published by the Free Software Foundation; either version 2\r
-* of the License, or (at your option) any later version.\r
-*\r
-* This program is distributed in the hope that it will be useful,\r
-* but WITHOUT ANY WARRANTY; without even the implied warranty of\r
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
-* GNU General Public License for more details.\r
-*\r
-* You should have received a copy of the GNU General Public License\r
-* along with this program; if not, write to the Free Software\r
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
-*/\r
+ * Jalview - A Sequence Alignment Editor and Viewer\r
+ * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ *\r
+ * This program is free software; you can redistribute it and/or\r
+ * modify it under the terms of the GNU General Public License\r
+ * as published by the Free Software Foundation; either version 2\r
+ * of the License, or (at your option) any later version.\r
+ *\r
+ * This program is distributed in the hope that it will be useful,\r
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
+ * GNU General Public License for more details.\r
+ *\r
+ * You should have received a copy of the GNU General Public License\r
+ * along with this program; if not, write to the Free Software\r
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
+ */\r
 package jalview.jbgui;\r
 \r
 import java.awt.*;\r
 import java.awt.event.*;\r
-\r
 import javax.swing.*;\r
 \r
-\r
-public class GTreePanel extends JInternalFrame {\r
-    BorderLayout borderLayout1 = new BorderLayout();\r
-    public JScrollPane scrollPane = new JScrollPane();\r
-    JMenuBar jMenuBar1 = new JMenuBar();\r
-    JMenu jMenu1 = new JMenu();\r
-    JMenuItem saveAsNewick = new JMenuItem();\r
-    JMenuItem printMenu = new JMenuItem();\r
-    JMenu jMenu2 = new JMenu();\r
-    public JMenuItem fontSize = new JMenuItem();\r
-    public JCheckBoxMenuItem bootstrapMenu = new JCheckBoxMenuItem();\r
-    public JCheckBoxMenuItem distanceMenu = new JCheckBoxMenuItem();\r
-    public JCheckBoxMenuItem fitToWindow = new JCheckBoxMenuItem();\r
-    public JCheckBoxMenuItem placeholdersMenu = new JCheckBoxMenuItem();\r
-    JMenuItem pngTree = new JMenuItem();\r
-    JMenuItem epsTree = new JMenuItem();\r
-    JMenu saveAsMenu = new JMenu();\r
-    JMenuItem textbox = new JMenuItem();\r
-\r
-    public GTreePanel() {\r
-        try {\r
-            jbInit();\r
-            this.setJMenuBar(jMenuBar1);\r
-        } catch (Exception e) {\r
-            e.printStackTrace();\r
-        }\r
-    }\r
-\r
-    private void jbInit() throws Exception {\r
-        this.getContentPane().setLayout(borderLayout1);\r
-        this.setBackground(Color.white);\r
-        this.setFont(new java.awt.Font("Verdana", 0, 12));\r
-        scrollPane.setOpaque(false);\r
-        jMenu1.setText("File");\r
-        saveAsNewick.setText("Newick Format");\r
-        saveAsNewick.addActionListener(new ActionListener() {\r
-                public void actionPerformed(ActionEvent e) {\r
-                    saveAsNewick_actionPerformed(e);\r
-                }\r
-            });\r
-        printMenu.setText("Print");\r
-        printMenu.addActionListener(new java.awt.event.ActionListener() {\r
-                public void actionPerformed(ActionEvent e) {\r
-                    printMenu_actionPerformed(e);\r
-                }\r
-            });\r
-        jMenu2.setText("View");\r
-        fontSize.setText("Font Size - 12");\r
-        fontSize.addActionListener(new java.awt.event.ActionListener() {\r
-                public void actionPerformed(ActionEvent e) {\r
-                    fontSize_actionPerformed(e);\r
-                }\r
-            });\r
-        bootstrapMenu.setText("Show Bootstrap Values");\r
-        bootstrapMenu.addActionListener(new java.awt.event.ActionListener() {\r
-                public void actionPerformed(ActionEvent e) {\r
-                    bootstrapMenu_actionPerformed(e);\r
-                }\r
-            });\r
-        distanceMenu.setText("Show Distances");\r
-        distanceMenu.addActionListener(new java.awt.event.ActionListener() {\r
-                public void actionPerformed(ActionEvent e) {\r
-                    distanceMenu_actionPerformed(e);\r
-                }\r
-            });\r
-        fitToWindow.setSelected(true);\r
-        fitToWindow.setText("Fit To Window");\r
-        fitToWindow.addActionListener(new java.awt.event.ActionListener() {\r
-                public void actionPerformed(ActionEvent e) {\r
-                    fitToWindow_actionPerformed(e);\r
-                }\r
-            });\r
-        epsTree.setText("EPS");\r
-        epsTree.addActionListener(new java.awt.event.ActionListener() {\r
-                public void actionPerformed(ActionEvent e) {\r
-                    epsTree_actionPerformed(e);\r
-                }\r
-            });\r
-        pngTree.setText("PNG");\r
-        pngTree.addActionListener(new java.awt.event.ActionListener() {\r
-                public void actionPerformed(ActionEvent e) {\r
-                    pngTree_actionPerformed(e);\r
-                }\r
-            });\r
-        saveAsMenu.setText("Save as");\r
-        placeholdersMenu.setToolTipText(\r
-            "Marks leaves of tree not associated with a sequence");\r
-        placeholdersMenu.setText("Mark Unlinked Leaves");\r
-        placeholdersMenu.addActionListener(new ActionListener() {\r
-                public void actionPerformed(ActionEvent e) {\r
-                    placeholdersMenu_actionPerformed(e);\r
-                }\r
-            });\r
-        textbox.setText("Output to Textbox...");\r
-        textbox.addActionListener(new ActionListener() {\r
-                public void actionPerformed(ActionEvent e) {\r
-                    textbox_actionPerformed(e);\r
-                }\r
-            });\r
-        this.getContentPane().add(scrollPane, BorderLayout.CENTER);\r
-        jMenuBar1.add(jMenu1);\r
-        jMenuBar1.add(jMenu2);\r
-        jMenu1.add(saveAsMenu);\r
-        jMenu1.add(textbox);\r
-        jMenu1.add(printMenu);\r
-        jMenu2.add(fitToWindow);\r
-        jMenu2.add(fontSize);\r
-        jMenu2.add(distanceMenu);\r
-        jMenu2.add(bootstrapMenu);\r
-        jMenu2.add(placeholdersMenu);\r
-        saveAsMenu.add(saveAsNewick);\r
-        saveAsMenu.add(epsTree);\r
-        saveAsMenu.add(pngTree);\r
-    }\r
-\r
-    public void printMenu_actionPerformed(ActionEvent e) {\r
-    }\r
-\r
-    public void fontSize_actionPerformed(ActionEvent e) {\r
-    }\r
-\r
-    public void distanceMenu_actionPerformed(ActionEvent e) {\r
-    }\r
-\r
-    public void bootstrapMenu_actionPerformed(ActionEvent e) {\r
-    }\r
-\r
-    public void fitToWindow_actionPerformed(ActionEvent e) {\r
-    }\r
-\r
-    public void pngTree_actionPerformed(ActionEvent e) {\r
-    }\r
-\r
-    public void epsTree_actionPerformed(ActionEvent e) {\r
-    }\r
-\r
-    public void saveAsNewick_actionPerformed(ActionEvent e) {\r
+public class GTreePanel\r
+    extends JInternalFrame\r
+{\r
+  BorderLayout borderLayout1 = new BorderLayout();\r
+  public JScrollPane scrollPane = new JScrollPane();\r
+  JMenuBar jMenuBar1 = new JMenuBar();\r
+  JMenu jMenu1 = new JMenu();\r
+  JMenuItem saveAsNewick = new JMenuItem();\r
+  JMenuItem printMenu = new JMenuItem();\r
+  JMenu jMenu2 = new JMenu();\r
+  public JMenuItem fontSize = new JMenuItem();\r
+  public JCheckBoxMenuItem bootstrapMenu = new JCheckBoxMenuItem();\r
+  public JCheckBoxMenuItem distanceMenu = new JCheckBoxMenuItem();\r
+  public JCheckBoxMenuItem fitToWindow = new JCheckBoxMenuItem();\r
+  public JCheckBoxMenuItem placeholdersMenu = new JCheckBoxMenuItem();\r
+  JMenuItem pngTree = new JMenuItem();\r
+  JMenuItem epsTree = new JMenuItem();\r
+  JMenu saveAsMenu = new JMenu();\r
+  JMenuItem textbox = new JMenuItem();\r
+\r
+  public GTreePanel()\r
+  {\r
+    try\r
+    {\r
+      jbInit();\r
+      this.setJMenuBar(jMenuBar1);\r
     }\r
-\r
-    public void placeholdersMenu_actionPerformed(ActionEvent e) {\r
-    }\r
-\r
-    public void textbox_actionPerformed(ActionEvent e) {\r
+    catch (Exception e)\r
+    {\r
+      e.printStackTrace();\r
     }\r
+  }\r
+\r
+  private void jbInit()\r
+      throws Exception\r
+  {\r
+    this.getContentPane().setLayout(borderLayout1);\r
+    this.setBackground(Color.white);\r
+    this.setFont(new java.awt.Font("Verdana", 0, 12));\r
+    scrollPane.setOpaque(false);\r
+    jMenu1.setText("File");\r
+    saveAsNewick.setText("Newick Format");\r
+    saveAsNewick.addActionListener(new ActionListener()\r
+    {\r
+      public void actionPerformed(ActionEvent e)\r
+      {\r
+        saveAsNewick_actionPerformed(e);\r
+      }\r
+    });\r
+    printMenu.setText("Print");\r
+    printMenu.addActionListener(new java.awt.event.ActionListener()\r
+    {\r
+      public void actionPerformed(ActionEvent e)\r
+      {\r
+        printMenu_actionPerformed(e);\r
+      }\r
+    });\r
+    jMenu2.setText("View");\r
+    fontSize.setText("Font Size - 12");\r
+    fontSize.addActionListener(new java.awt.event.ActionListener()\r
+    {\r
+      public void actionPerformed(ActionEvent e)\r
+      {\r
+        fontSize_actionPerformed(e);\r
+      }\r
+    });\r
+    bootstrapMenu.setText("Show Bootstrap Values");\r
+    bootstrapMenu.addActionListener(new java.awt.event.ActionListener()\r
+    {\r
+      public void actionPerformed(ActionEvent e)\r
+      {\r
+        bootstrapMenu_actionPerformed(e);\r
+      }\r
+    });\r
+    distanceMenu.setText("Show Distances");\r
+    distanceMenu.addActionListener(new java.awt.event.ActionListener()\r
+    {\r
+      public void actionPerformed(ActionEvent e)\r
+      {\r
+        distanceMenu_actionPerformed(e);\r
+      }\r
+    });\r
+    fitToWindow.setSelected(true);\r
+    fitToWindow.setText("Fit To Window");\r
+    fitToWindow.addActionListener(new java.awt.event.ActionListener()\r
+    {\r
+      public void actionPerformed(ActionEvent e)\r
+      {\r
+        fitToWindow_actionPerformed(e);\r
+      }\r
+    });\r
+    epsTree.setText("EPS");\r
+    epsTree.addActionListener(new java.awt.event.ActionListener()\r
+    {\r
+      public void actionPerformed(ActionEvent e)\r
+      {\r
+        epsTree_actionPerformed(e);\r
+      }\r
+    });\r
+    pngTree.setText("PNG");\r
+    pngTree.addActionListener(new java.awt.event.ActionListener()\r
+    {\r
+      public void actionPerformed(ActionEvent e)\r
+      {\r
+        pngTree_actionPerformed(e);\r
+      }\r
+    });\r
+    saveAsMenu.setText("Save as");\r
+    placeholdersMenu.setToolTipText(\r
+        "Marks leaves of tree not associated with a sequence");\r
+    placeholdersMenu.setText("Mark Unlinked Leaves");\r
+    placeholdersMenu.addActionListener(new ActionListener()\r
+    {\r
+      public void actionPerformed(ActionEvent e)\r
+      {\r
+        placeholdersMenu_actionPerformed(e);\r
+      }\r
+    });\r
+    textbox.setText("Output to Textbox...");\r
+    textbox.addActionListener(new ActionListener()\r
+    {\r
+      public void actionPerformed(ActionEvent e)\r
+      {\r
+        textbox_actionPerformed(e);\r
+      }\r
+    });\r
+    this.getContentPane().add(scrollPane, BorderLayout.CENTER);\r
+    jMenuBar1.add(jMenu1);\r
+    jMenuBar1.add(jMenu2);\r
+    jMenu1.add(saveAsMenu);\r
+    jMenu1.add(textbox);\r
+    jMenu1.add(printMenu);\r
+    jMenu2.add(fitToWindow);\r
+    jMenu2.add(fontSize);\r
+    jMenu2.add(distanceMenu);\r
+    jMenu2.add(bootstrapMenu);\r
+    jMenu2.add(placeholdersMenu);\r
+    saveAsMenu.add(saveAsNewick);\r
+    saveAsMenu.add(epsTree);\r
+    saveAsMenu.add(pngTree);\r
+  }\r
+\r
+  public void printMenu_actionPerformed(ActionEvent e)\r
+  {\r
+  }\r
+\r
+  public void fontSize_actionPerformed(ActionEvent e)\r
+  {\r
+  }\r
+\r
+  public void distanceMenu_actionPerformed(ActionEvent e)\r
+  {\r
+  }\r
+\r
+  public void bootstrapMenu_actionPerformed(ActionEvent e)\r
+  {\r
+  }\r
+\r
+  public void fitToWindow_actionPerformed(ActionEvent e)\r
+  {\r
+  }\r
+\r
+  public void pngTree_actionPerformed(ActionEvent e)\r
+  {\r
+  }\r
+\r
+  public void epsTree_actionPerformed(ActionEvent e)\r
+  {\r
+  }\r
+\r
+  public void saveAsNewick_actionPerformed(ActionEvent e)\r
+  {\r
+  }\r
+\r
+  public void placeholdersMenu_actionPerformed(ActionEvent e)\r
+  {\r
+  }\r
+\r
+  public void textbox_actionPerformed(ActionEvent e)\r
+  {\r
+  }\r
 }\r