Merge branch 'develop' into features/JAL-4134_use_annotation_row_for_colours_and_groups

[jalview.git] / src / jalview / project / Jalview2XML.java

diff --git a/src/jalview/project/Jalview2XML.java b/src/jalview/project/Jalview2XML.java
index 4a2c96e..6f26036 100644 (file)
--- a/src/jalview/project/Jalview2XML.java
+++ b/src/jalview/project/Jalview2XML.java
@@ -2339,7 +2339,6 @@ public class Jalview2XML
               {
                 xmlmat.setCutHeight(cm.getCutHeight());
               }
-
               // set/get properties
               if (cm instanceof MappableContactMatrixI)
               {
@@ -2517,7 +2516,6 @@ public class Jalview2XML
     return BitSet.valueOf(newlongvals);
 
   }
-
   private CalcIdParam createCalcIdParam(String calcId, AlignViewport av)
   {
     AutoCalcSetting settings = av.getCalcIdSettingsFor(calcId);
@@ -4090,7 +4088,6 @@ public class Jalview2XML
                     Console.log.info(
                             "Ignoring additional clusterings for contact matrix");
                   }
-
                   String treeMethod = xmlmat.getTreeMethod();
                   double thresh = xmlmat.getCutHeight() != null
                           ? xmlmat.getCutHeight()