}
if (safeBoolean(jseq.isViewreference()))
- // if (jseq.isViewreference() != null
- // && jseq.isViewreference().booleanValue())
{
referenceseqForView = tmpseqs.get(tmpseqs.size() - 1);
}
// annotation.setAutoCalculated(true);
// }
}
- if (autoForView || // (annotation.hasAutoCalculated() &&
- annotation.isAutoCalculated())
+ if (autoForView || annotation.isAutoCalculated())
{
// remove ID - we don't recover annotation from other views for
// view-specific annotation
initSeqRefs();
JalviewModel jm = saveState(ap, null, null, null);
+ addDatasetRef(
+ jm.getVamsasModel().getSequenceSet().get(0).getDatasetId(),
+ ap.getAlignment().getDataset());
+
uniqueSetSuffix = "";
// jm.getJalviewModelSequence().getViewport(0).setId(null);
jm.getViewport().get(0).setId(null);