JAL-2624 check feature colour threshold when colouring structure

[jalview.git] / src / jalview / renderer / seqfeatures / FeatureRenderer.java

diff --git a/src/jalview/renderer/seqfeatures/FeatureRenderer.java b/src/jalview/renderer/seqfeatures/FeatureRenderer.java
index 98f5bff..759101d 100644 (file)
--- a/src/jalview/renderer/seqfeatures/FeatureRenderer.java
+++ b/src/jalview/renderer/seqfeatures/FeatureRenderer.java
@@ -335,6 +335,12 @@ public class FeatureRenderer extends FeatureRendererModel
         }
 
         Color featureColour = getColour(sequenceFeature);
+        if (featureColour == null)
+        {
+          // score feature outwith threshold for colouring
+          continue;
+        }
+
         boolean isContactFeature = sequenceFeature.isContactFeature();
 
         if (isContactFeature)
@@ -352,7 +358,7 @@ public class FeatureRenderer extends FeatureRendererModel
             drawnColour = featureColour;
           }
         }
-        else if (showFeature(sequenceFeature))
+        else
         {
           if (av.isShowSequenceFeaturesHeight()
                   && !Float.isNaN(sequenceFeature.score))