package jalview.renderer.seqfeatures;
import jalview.api.AlignViewportI;
+import jalview.api.FeatureColourI;
import jalview.datamodel.SequenceFeature;
import jalview.datamodel.SequenceI;
import jalview.util.Comparison;
continue;
}
+ FeatureColourI fc = getFeatureStyle(type);
List<SequenceFeature> overlaps = seq.findFeatures(start + 1, end + 1,
type);
+
+ filterFeaturesForDisplay(overlaps, fc);
+
for (SequenceFeature sf : overlaps)
{
/*
continue;
}
- Color featureColour = getColour(sf);
+ Color featureColour = fc.getColor(sf);
boolean isContactFeature = sf.isContactFeature();
int featureStartCol = seq.findIndex(sf.begin);