package jalview.schemabinding.version2;
- //---------------------------------/
- //- Imported classes and packages -/
+//---------------------------------/
+//- Imported classes and packages -/
//---------------------------------/
import org.exolab.castor.xml.Marshaller;
*
* @version $Revision$ $Date$
*/
-public class AlcodMap implements java.io.Serializable {
-
-
- //--------------------------/
- //- Class/Member Variables -/
- //--------------------------/
-
- /**
- * internal jalview id for the dnasq for this mapping.
- *
- */
- private java.lang.String _dnasq;
-
- /**
- * a Mapping entry and an associated protein sequence
- *
- */
- private jalview.schemabinding.version2.Mapping _mapping;
-
-
- //----------------/
- //- Constructors -/
- //----------------/
-
- public AlcodMap() {
- super();
- }
-
-
- //-----------/
- //- Methods -/
- //-----------/
-
- /**
- * Returns the value of field 'dnasq'. The field 'dnasq' has
- * the following description: internal jalview id for the dnasq
- * for this mapping.
- *
- *
- * @return the value of field 'Dnasq'.
- */
- public java.lang.String getDnasq(
- ) {
- return this._dnasq;
- }
-
- /**
- * Returns the value of field 'mapping'. The field 'mapping'
- * has the following description: a Mapping entry and an
- * associated protein sequence
- *
- *
- * @return the value of field 'Mapping'.
- */
- public jalview.schemabinding.version2.Mapping getMapping(
- ) {
- return this._mapping;
- }
-
- /**
- * Method isValid.
- *
- * @return true if this object is valid according to the schema
- */
- public boolean isValid(
- ) {
- try {
- validate();
- } catch (org.exolab.castor.xml.ValidationException vex) {
- return false;
- }
- return true;
- }
-
- /**
- *
- *
- * @param out
- * @throws org.exolab.castor.xml.MarshalException if object is
- * null or if any SAXException is thrown during marshaling
- * @throws org.exolab.castor.xml.ValidationException if this
- * object is an invalid instance according to the schema
- */
- public void marshal(
- final java.io.Writer out)
- throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
- Marshaller.marshal(this, out);
- }
-
- /**
- *
- *
- * @param handler
- * @throws java.io.IOException if an IOException occurs during
- * marshaling
- * @throws org.exolab.castor.xml.ValidationException if this
- * object is an invalid instance according to the schema
- * @throws org.exolab.castor.xml.MarshalException if object is
- * null or if any SAXException is thrown during marshaling
- */
- public void marshal(
- final org.xml.sax.ContentHandler handler)
- throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
- Marshaller.marshal(this, handler);
- }
-
- /**
- * Sets the value of field 'dnasq'. The field 'dnasq' has the
- * following description: internal jalview id for the dnasq for
- * this mapping.
- *
- *
- * @param dnasq the value of field 'dnasq'.
- */
- public void setDnasq(
- final java.lang.String dnasq) {
- this._dnasq = dnasq;
- }
-
- /**
- * Sets the value of field 'mapping'. The field 'mapping' has
- * the following description: a Mapping entry and an associated
- * protein sequence
- *
- *
- * @param mapping the value of field 'mapping'.
- */
- public void setMapping(
- final jalview.schemabinding.version2.Mapping mapping) {
- this._mapping = mapping;
- }
-
- /**
- * Method unmarshal.
- *
- * @param reader
- * @throws org.exolab.castor.xml.MarshalException if object is
- * null or if any SAXException is thrown during marshaling
- * @throws org.exolab.castor.xml.ValidationException if this
- * object is an invalid instance according to the schema
- * @return the unmarshaled
- * jalview.schemabinding.version2.AlcodMap
- */
- public static jalview.schemabinding.version2.AlcodMap unmarshal(
- final java.io.Reader reader)
- throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
- return (jalview.schemabinding.version2.AlcodMap) Unmarshaller.unmarshal(jalview.schemabinding.version2.AlcodMap.class, reader);
- }
-
- /**
- *
- *
- * @throws org.exolab.castor.xml.ValidationException if this
- * object is an invalid instance according to the schema
- */
- public void validate(
- )
- throws org.exolab.castor.xml.ValidationException {
- org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
- validator.validate(this);
+public class AlcodMap implements java.io.Serializable
+{
+
+ // --------------------------/
+ // - Class/Member Variables -/
+ // --------------------------/
+
+ /**
+ * internal jalview id for the dnasq for this mapping.
+ *
+ */
+ private java.lang.String _dnasq;
+
+ /**
+ * a Mapping entry and an associated protein sequence
+ *
+ */
+ private jalview.schemabinding.version2.Mapping _mapping;
+
+ // ----------------/
+ // - Constructors -/
+ // ----------------/
+
+ public AlcodMap()
+ {
+ super();
+ }
+
+ // -----------/
+ // - Methods -/
+ // -----------/
+
+ /**
+ * Returns the value of field 'dnasq'. The field 'dnasq' has the following
+ * description: internal jalview id for the dnasq for this mapping.
+ *
+ *
+ * @return the value of field 'Dnasq'.
+ */
+ public java.lang.String getDnasq()
+ {
+ return this._dnasq;
+ }
+
+ /**
+ * Returns the value of field 'mapping'. The field 'mapping' has the following
+ * description: a Mapping entry and an associated protein sequence
+ *
+ *
+ * @return the value of field 'Mapping'.
+ */
+ public jalview.schemabinding.version2.Mapping getMapping()
+ {
+ return this._mapping;
+ }
+
+ /**
+ * Method isValid.
+ *
+ * @return true if this object is valid according to the schema
+ */
+ public boolean isValid()
+ {
+ try
+ {
+ validate();
+ } catch (org.exolab.castor.xml.ValidationException vex)
+ {
+ return false;
}
+ return true;
+ }
+
+ /**
+ *
+ *
+ * @param out
+ * @throws org.exolab.castor.xml.MarshalException
+ * if object is null or if any SAXException is thrown during
+ * marshaling
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ */
+ public void marshal(final java.io.Writer out)
+ throws org.exolab.castor.xml.MarshalException,
+ org.exolab.castor.xml.ValidationException
+ {
+ Marshaller.marshal(this, out);
+ }
+
+ /**
+ *
+ *
+ * @param handler
+ * @throws java.io.IOException
+ * if an IOException occurs during marshaling
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ * @throws org.exolab.castor.xml.MarshalException
+ * if object is null or if any SAXException is thrown during
+ * marshaling
+ */
+ public void marshal(final org.xml.sax.ContentHandler handler)
+ throws java.io.IOException,
+ org.exolab.castor.xml.MarshalException,
+ org.exolab.castor.xml.ValidationException
+ {
+ Marshaller.marshal(this, handler);
+ }
+
+ /**
+ * Sets the value of field 'dnasq'. The field 'dnasq' has the following
+ * description: internal jalview id for the dnasq for this mapping.
+ *
+ *
+ * @param dnasq
+ * the value of field 'dnasq'.
+ */
+ public void setDnasq(final java.lang.String dnasq)
+ {
+ this._dnasq = dnasq;
+ }
+
+ /**
+ * Sets the value of field 'mapping'. The field 'mapping' has the following
+ * description: a Mapping entry and an associated protein sequence
+ *
+ *
+ * @param mapping
+ * the value of field 'mapping'.
+ */
+ public void setMapping(
+ final jalview.schemabinding.version2.Mapping mapping)
+ {
+ this._mapping = mapping;
+ }
+
+ /**
+ * Method unmarshal.
+ *
+ * @param reader
+ * @throws org.exolab.castor.xml.MarshalException
+ * if object is null or if any SAXException is thrown during
+ * marshaling
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ * @return the unmarshaled jalview.schemabinding.version2.AlcodMap
+ */
+ public static jalview.schemabinding.version2.AlcodMap unmarshal(
+ final java.io.Reader reader)
+ throws org.exolab.castor.xml.MarshalException,
+ org.exolab.castor.xml.ValidationException
+ {
+ return (jalview.schemabinding.version2.AlcodMap) Unmarshaller
+ .unmarshal(jalview.schemabinding.version2.AlcodMap.class,
+ reader);
+ }
+
+ /**
+ *
+ *
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ */
+ public void validate() throws org.exolab.castor.xml.ValidationException
+ {
+ org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
+ validator.validate(this);
+ }
}
git://source.jalview.org / jalview.git / blobdiff