This commit was manufactured by cvs2svn to create branch 'VamJalview'.

[jalview.git] / src / jalview / schemabinding / version2 / Alignment.java

diff --git a/src/jalview/schemabinding/version2/Alignment.java b/src/jalview/schemabinding/version2/Alignment.java
new file mode 100755 (executable)
index 0000000..3b9d53b
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+++ b/src/jalview/schemabinding/version2/Alignment.java
@@ -0,0 +1,173 @@
+/*\r
+ * This class was automatically generated with \r
+ * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
+ * Schema.\r
+ * $Id$\r
+ */\r
+\r
+package jalview.schemabinding.version2;\r
+\r
+  //---------------------------------/\r
+ //- Imported classes and packages -/\r
+//---------------------------------/\r
+\r
+import java.io.IOException;\r
+import java.io.Reader;\r
+import java.io.Serializable;\r
+import java.io.Writer;\r
+import org.exolab.castor.xml.MarshalException;\r
+import org.exolab.castor.xml.Marshaller;\r
+import org.exolab.castor.xml.Unmarshaller;\r
+import org.exolab.castor.xml.ValidationException;\r
+import org.xml.sax.ContentHandler;\r
+\r
+/**\r
+ * Class Alignment.\r
+ * \r
+ * @version $Revision$ $Date$\r
+ */\r
+public class Alignment implements java.io.Serializable {\r
+\r
+\r
+      //--------------------------/\r
+     //- Class/Member Variables -/\r
+    //--------------------------/\r
+\r
+    /**\r
+     * Field _annotation\r
+     */\r
+    private jalview.schemabinding.version2.Annotation _annotation;\r
+\r
+    /**\r
+     * Field _sequenceSet\r
+     */\r
+    private jalview.schemabinding.version2.SequenceSet _sequenceSet;\r
+\r
+\r
+      //----------------/\r
+     //- Constructors -/\r
+    //----------------/\r
+\r
+    public Alignment() {\r
+        super();\r
+    } //-- jalview.schemabinding.version2.Alignment()\r
+\r
+\r
+      //-----------/\r
+     //- Methods -/\r
+    //-----------/\r
+\r
+    /**\r
+     * Returns the value of field 'annotation'.\r
+     * \r
+     * @return Annotation\r
+     * @return the value of field 'annotation'.\r
+     */\r
+    public jalview.schemabinding.version2.Annotation getAnnotation()\r
+    {\r
+        return this._annotation;\r
+    } //-- jalview.schemabinding.version2.Annotation getAnnotation() \r
+\r
+    /**\r
+     * Returns the value of field 'sequenceSet'.\r
+     * \r
+     * @return SequenceSet\r
+     * @return the value of field 'sequenceSet'.\r
+     */\r
+    public jalview.schemabinding.version2.SequenceSet getSequenceSet()\r
+    {\r
+        return this._sequenceSet;\r
+    } //-- jalview.schemabinding.version2.SequenceSet getSequenceSet() \r
+\r
+    /**\r
+     * Method isValid\r
+     * \r
+     * \r
+     * \r
+     * @return boolean\r
+     */\r
+    public boolean isValid()\r
+    {\r
+        try {\r
+            validate();\r
+        }\r
+        catch (org.exolab.castor.xml.ValidationException vex) {\r
+            return false;\r
+        }\r
+        return true;\r
+    } //-- boolean isValid() \r
+\r
+    /**\r
+     * Method marshal\r
+     * \r
+     * \r
+     * \r
+     * @param out\r
+     */\r
+    public void marshal(java.io.Writer out)\r
+        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
+    {\r
+        \r
+        Marshaller.marshal(this, out);\r
+    } //-- void marshal(java.io.Writer) \r
+\r
+    /**\r
+     * Method marshal\r
+     * \r
+     * \r
+     * \r
+     * @param handler\r
+     */\r
+    public void marshal(org.xml.sax.ContentHandler handler)\r
+        throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
+    {\r
+        \r
+        Marshaller.marshal(this, handler);\r
+    } //-- void marshal(org.xml.sax.ContentHandler) \r
+\r
+    /**\r
+     * Sets the value of field 'annotation'.\r
+     * \r
+     * @param annotation the value of field 'annotation'.\r
+     */\r
+    public void setAnnotation(jalview.schemabinding.version2.Annotation annotation)\r
+    {\r
+        this._annotation = annotation;\r
+    } //-- void setAnnotation(jalview.schemabinding.version2.Annotation) \r
+\r
+    /**\r
+     * Sets the value of field 'sequenceSet'.\r
+     * \r
+     * @param sequenceSet the value of field 'sequenceSet'.\r
+     */\r
+    public void setSequenceSet(jalview.schemabinding.version2.SequenceSet sequenceSet)\r
+    {\r
+        this._sequenceSet = sequenceSet;\r
+    } //-- void setSequenceSet(jalview.schemabinding.version2.SequenceSet) \r
+\r
+    /**\r
+     * Method unmarshal\r
+     * \r
+     * \r
+     * \r
+     * @param reader\r
+     * @return Object\r
+     */\r
+    public static java.lang.Object unmarshal(java.io.Reader reader)\r
+        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException\r
+    {\r
+        return (jalview.schemabinding.version2.Alignment) Unmarshaller.unmarshal(jalview.schemabinding.version2.Alignment.class, reader);\r
+    } //-- java.lang.Object unmarshal(java.io.Reader) \r
+\r
+    /**\r
+     * Method validate\r
+     * \r
+     */\r
+    public void validate()\r
+        throws org.exolab.castor.xml.ValidationException\r
+    {\r
+        org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();\r
+        validator.validate(this);\r
+    } //-- void validate() \r
+\r
+}\r