/*
- * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
- * Copyright (C) $$Year-Rel$$ The Jalview Authors
- *
- * This file is part of Jalview.
- *
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation, either version 3
- * of the License, or (at your option) any later version.
- *
- * Jalview is distributed in the hope that it will be useful, but
- * WITHOUT ANY WARRANTY; without even the implied warranty
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
- * PURPOSE. See the GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
- * The Jalview Authors are detailed in the 'AUTHORS' file.
+ * This class was automatically generated with
+ * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
+ * Schema.
+ * $Id$
*/
+
package jalview.schemabinding.version2;
-//---------------------------------/
-//- Imported classes and packages -/
+ //---------------------------------/
+ //- Imported classes and packages -/
//---------------------------------/
-import jalview.util.MessageManager;
-
import org.exolab.castor.xml.Marshaller;
import org.exolab.castor.xml.Unmarshaller;
*
* @version $Revision$ $Date$
*/
-public class Pdbids extends jalview.schemabinding.version2.Pdbentry
- implements java.io.Serializable
+public class Pdbids extends jalview.schemabinding.version2.Pdbentry
+implements java.io.Serializable
{
- // --------------------------/
- // - Class/Member Variables -/
- // --------------------------/
- /**
- * Field _structureStateList.
- */
- private java.util.Vector _structureStateList;
+ //--------------------------/
+ //- Class/Member Variables -/
+ //--------------------------/
- // ----------------/
- // - Constructors -/
- // ----------------/
+ /**
+ * Field _structureStateList.
+ */
+ private java.util.Vector _structureStateList;
- public Pdbids()
- {
- super();
- this._structureStateList = new java.util.Vector();
- }
- // -----------/
- // - Methods -/
- // -----------/
+ //----------------/
+ //- Constructors -/
+ //----------------/
- /**
- *
- *
- * @param vStructureState
- * @throws java.lang.IndexOutOfBoundsException
- * if the index given is outside the bounds of the collection
- */
- public void addStructureState(
- final jalview.schemabinding.version2.StructureState vStructureState)
- throws java.lang.IndexOutOfBoundsException
- {
- this._structureStateList.addElement(vStructureState);
- }
+ public Pdbids() {
+ super();
+ this._structureStateList = new java.util.Vector();
+ }
- /**
- *
- *
- * @param index
- * @param vStructureState
- * @throws java.lang.IndexOutOfBoundsException
- * if the index given is outside the bounds of the collection
- */
- public void addStructureState(
- final int index,
- final jalview.schemabinding.version2.StructureState vStructureState)
- throws java.lang.IndexOutOfBoundsException
- {
- this._structureStateList.add(index, vStructureState);
- }
- /**
- * Method enumerateStructureState.
- *
- * @return an Enumeration over all
- * jalview.schemabinding.version2.StructureState elements
- */
- public java.util.Enumeration enumerateStructureState()
- {
- return this._structureStateList.elements();
- }
+ //-----------/
+ //- Methods -/
+ //-----------/
- /**
- * Method getStructureState.
- *
- * @param index
- * @throws java.lang.IndexOutOfBoundsException
- * if the index given is outside the bounds of the collection
- * @return the value of the jalview.schemabinding.version2.StructureState at
- * the given index
- */
- public jalview.schemabinding.version2.StructureState getStructureState(
- final int index) throws java.lang.IndexOutOfBoundsException
- {
- // check bounds for index
- if (index < 0 || index >= this._structureStateList.size())
- {
- throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
- "getStructureState",
- Integer.valueOf(index).toString(),
- Integer.valueOf((this._structureStateList.size() - 1)).toString()
- }));
+ /**
+ *
+ *
+ * @param vStructureState
+ * @throws java.lang.IndexOutOfBoundsException if the index
+ * given is outside the bounds of the collection
+ */
+ public void addStructureState(
+ final jalview.schemabinding.version2.StructureState vStructureState)
+ throws java.lang.IndexOutOfBoundsException {
+ this._structureStateList.addElement(vStructureState);
}
- return (jalview.schemabinding.version2.StructureState) _structureStateList
- .get(index);
- }
+ /**
+ *
+ *
+ * @param index
+ * @param vStructureState
+ * @throws java.lang.IndexOutOfBoundsException if the index
+ * given is outside the bounds of the collection
+ */
+ public void addStructureState(
+ final int index,
+ final jalview.schemabinding.version2.StructureState vStructureState)
+ throws java.lang.IndexOutOfBoundsException {
+ this._structureStateList.add(index, vStructureState);
+ }
- /**
- * Method getStructureState.Returns the contents of the collection in an
- * Array.
- * <p>
- * Note: Just in case the collection contents are changing in another thread,
- * we pass a 0-length Array of the correct type into the API call. This way we
- * <i>know</i> that the Array returned is of exactly the correct length.
- *
- * @return this collection as an Array
- */
- public jalview.schemabinding.version2.StructureState[] getStructureState()
- {
- jalview.schemabinding.version2.StructureState[] array = new jalview.schemabinding.version2.StructureState[0];
- return (jalview.schemabinding.version2.StructureState[]) this._structureStateList
- .toArray(array);
- }
+ /**
+ * Method enumerateStructureState.
+ *
+ * @return an Enumeration over all
+ * jalview.schemabinding.version2.StructureState elements
+ */
+ public java.util.Enumeration enumerateStructureState(
+ ) {
+ return this._structureStateList.elements();
+ }
- /**
- * Method getStructureStateCount.
- *
- * @return the size of this collection
- */
- public int getStructureStateCount()
- {
- return this._structureStateList.size();
- }
+ /**
+ * Method getStructureState.
+ *
+ * @param index
+ * @throws java.lang.IndexOutOfBoundsException if the index
+ * given is outside the bounds of the collection
+ * @return the value of the
+ * jalview.schemabinding.version2.StructureState at the given
+ * index
+ */
+ public jalview.schemabinding.version2.StructureState getStructureState(
+ final int index)
+ throws java.lang.IndexOutOfBoundsException {
+ // check bounds for index
+ if (index < 0 || index >= this._structureStateList.size()) {
+ throw new IndexOutOfBoundsException("getStructureState: Index value '" + index + "' not in range [0.." + (this._structureStateList.size() - 1) + "]");
+ }
+
+ return (jalview.schemabinding.version2.StructureState) _structureStateList.get(index);
+ }
- /**
- * Method isValid.
- *
- * @return true if this object is valid according to the schema
- */
- public boolean isValid()
- {
- try
- {
- validate();
- } catch (org.exolab.castor.xml.ValidationException vex)
- {
- return false;
+ /**
+ * Method getStructureState.Returns the contents of the
+ * collection in an Array. <p>Note: Just in case the
+ * collection contents are changing in another thread, we pass
+ * a 0-length Array of the correct type into the API call.
+ * This way we <i>know</i> that the Array returned is of
+ * exactly the correct length.
+ *
+ * @return this collection as an Array
+ */
+ public jalview.schemabinding.version2.StructureState[] getStructureState(
+ ) {
+ jalview.schemabinding.version2.StructureState[] array = new jalview.schemabinding.version2.StructureState[0];
+ return (jalview.schemabinding.version2.StructureState[]) this._structureStateList.toArray(array);
}
- return true;
- }
- /**
- *
- *
- * @param out
- * @throws org.exolab.castor.xml.MarshalException
- * if object is null or if any SAXException is thrown during
- * marshaling
- * @throws org.exolab.castor.xml.ValidationException
- * if this object is an invalid instance according to the schema
- */
- public void marshal(final java.io.Writer out)
- throws org.exolab.castor.xml.MarshalException,
- org.exolab.castor.xml.ValidationException
- {
- Marshaller.marshal(this, out);
- }
+ /**
+ * Method getStructureStateCount.
+ *
+ * @return the size of this collection
+ */
+ public int getStructureStateCount(
+ ) {
+ return this._structureStateList.size();
+ }
- /**
- *
- *
- * @param handler
- * @throws java.io.IOException
- * if an IOException occurs during marshaling
- * @throws org.exolab.castor.xml.ValidationException
- * if this object is an invalid instance according to the schema
- * @throws org.exolab.castor.xml.MarshalException
- * if object is null or if any SAXException is thrown during
- * marshaling
- */
- public void marshal(final org.xml.sax.ContentHandler handler)
- throws java.io.IOException,
- org.exolab.castor.xml.MarshalException,
- org.exolab.castor.xml.ValidationException
- {
- Marshaller.marshal(this, handler);
- }
+ /**
+ * Method isValid.
+ *
+ * @return true if this object is valid according to the schema
+ */
+ public boolean isValid(
+ ) {
+ try {
+ validate();
+ } catch (org.exolab.castor.xml.ValidationException vex) {
+ return false;
+ }
+ return true;
+ }
- /**
+ /**
+ *
+ *
+ * @param out
+ * @throws org.exolab.castor.xml.MarshalException if object is
+ * null or if any SAXException is thrown during marshaling
+ * @throws org.exolab.castor.xml.ValidationException if this
+ * object is an invalid instance according to the schema
*/
- public void removeAllStructureState()
- {
- this._structureStateList.clear();
- }
+ public void marshal(
+ final java.io.Writer out)
+ throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
+ Marshaller.marshal(this, out);
+ }
- /**
- * Method removeStructureState.
- *
- * @param vStructureState
- * @return true if the object was removed from the collection.
- */
- public boolean removeStructureState(
- final jalview.schemabinding.version2.StructureState vStructureState)
- {
- boolean removed = _structureStateList.remove(vStructureState);
- return removed;
- }
+ /**
+ *
+ *
+ * @param handler
+ * @throws java.io.IOException if an IOException occurs during
+ * marshaling
+ * @throws org.exolab.castor.xml.ValidationException if this
+ * object is an invalid instance according to the schema
+ * @throws org.exolab.castor.xml.MarshalException if object is
+ * null or if any SAXException is thrown during marshaling
+ */
+ public void marshal(
+ final org.xml.sax.ContentHandler handler)
+ throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
+ Marshaller.marshal(this, handler);
+ }
- /**
- * Method removeStructureStateAt.
- *
- * @param index
- * @return the element removed from the collection
- */
- public jalview.schemabinding.version2.StructureState removeStructureStateAt(
- final int index)
- {
- java.lang.Object obj = this._structureStateList.remove(index);
- return (jalview.schemabinding.version2.StructureState) obj;
- }
+ /**
+ */
+ public void removeAllStructureState(
+ ) {
+ this._structureStateList.clear();
+ }
- /**
- *
- *
- * @param index
- * @param vStructureState
- * @throws java.lang.IndexOutOfBoundsException
- * if the index given is outside the bounds of the collection
- */
- public void setStructureState(
- final int index,
- final jalview.schemabinding.version2.StructureState vStructureState)
- throws java.lang.IndexOutOfBoundsException
- {
- // check bounds for index
- if (index < 0 || index >= this._structureStateList.size())
- {
- throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
- "setStructureState",
- Integer.valueOf(index).toString(),
- Integer.valueOf((this._structureStateList.size() - 1)).toString()
- }));
+ /**
+ * Method removeStructureState.
+ *
+ * @param vStructureState
+ * @return true if the object was removed from the collection.
+ */
+ public boolean removeStructureState(
+ final jalview.schemabinding.version2.StructureState vStructureState) {
+ boolean removed = _structureStateList.remove(vStructureState);
+ return removed;
}
- this._structureStateList.set(index, vStructureState);
- }
+ /**
+ * Method removeStructureStateAt.
+ *
+ * @param index
+ * @return the element removed from the collection
+ */
+ public jalview.schemabinding.version2.StructureState removeStructureStateAt(
+ final int index) {
+ java.lang.Object obj = this._structureStateList.remove(index);
+ return (jalview.schemabinding.version2.StructureState) obj;
+ }
- /**
- *
- *
- * @param vStructureStateArray
- */
- public void setStructureState(
- final jalview.schemabinding.version2.StructureState[] vStructureStateArray)
- {
- // -- copy array
- _structureStateList.clear();
+ /**
+ *
+ *
+ * @param index
+ * @param vStructureState
+ * @throws java.lang.IndexOutOfBoundsException if the index
+ * given is outside the bounds of the collection
+ */
+ public void setStructureState(
+ final int index,
+ final jalview.schemabinding.version2.StructureState vStructureState)
+ throws java.lang.IndexOutOfBoundsException {
+ // check bounds for index
+ if (index < 0 || index >= this._structureStateList.size()) {
+ throw new IndexOutOfBoundsException("setStructureState: Index value '" + index + "' not in range [0.." + (this._structureStateList.size() - 1) + "]");
+ }
+
+ this._structureStateList.set(index, vStructureState);
+ }
- for (int i = 0; i < vStructureStateArray.length; i++)
- {
- this._structureStateList.add(vStructureStateArray[i]);
+ /**
+ *
+ *
+ * @param vStructureStateArray
+ */
+ public void setStructureState(
+ final jalview.schemabinding.version2.StructureState[] vStructureStateArray) {
+ //-- copy array
+ _structureStateList.clear();
+
+ for (int i = 0; i < vStructureStateArray.length; i++) {
+ this._structureStateList.add(vStructureStateArray[i]);
+ }
}
- }
- /**
- * Method unmarshal.
- *
- * @param reader
- * @throws org.exolab.castor.xml.MarshalException
- * if object is null or if any SAXException is thrown during
- * marshaling
- * @throws org.exolab.castor.xml.ValidationException
- * if this object is an invalid instance according to the schema
- * @return the unmarshaled jalview.schemabinding.version2.Pdbentry
- */
- public static jalview.schemabinding.version2.Pdbentry unmarshal(
- final java.io.Reader reader)
- throws org.exolab.castor.xml.MarshalException,
- org.exolab.castor.xml.ValidationException
- {
- return (jalview.schemabinding.version2.Pdbentry) Unmarshaller
- .unmarshal(jalview.schemabinding.version2.Pdbids.class, reader);
- }
+ /**
+ * Method unmarshal.
+ *
+ * @param reader
+ * @throws org.exolab.castor.xml.MarshalException if object is
+ * null or if any SAXException is thrown during marshaling
+ * @throws org.exolab.castor.xml.ValidationException if this
+ * object is an invalid instance according to the schema
+ * @return the unmarshaled
+ * jalview.schemabinding.version2.Pdbentry
+ */
+ public static jalview.schemabinding.version2.Pdbentry unmarshal(
+ final java.io.Reader reader)
+ throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
+ return (jalview.schemabinding.version2.Pdbentry) Unmarshaller.unmarshal(jalview.schemabinding.version2.Pdbids.class, reader);
+ }
- /**
- *
- *
- * @throws org.exolab.castor.xml.ValidationException
- * if this object is an invalid instance according to the schema
- */
- public void validate() throws org.exolab.castor.xml.ValidationException
- {
- org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
- validator.validate(this);
- }
+ /**
+ *
+ *
+ * @throws org.exolab.castor.xml.ValidationException if this
+ * object is an invalid instance according to the schema
+ */
+ public void validate(
+ )
+ throws org.exolab.castor.xml.ValidationException {
+ org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
+ validator.validate(this);
+ }
}
git://source.jalview.org / jalview.git / blobdiff