/*\r
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)\r
- * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)\r
+ * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle\r
* \r
- * This program is free software; you can redistribute it and/or\r
- * modify it under the terms of the GNU General Public License\r
- * as published by the Free Software Foundation; either version 2\r
- * of the License, or (at your option) any later version.\r
+ * This file is part of Jalview.\r
* \r
- * This program is distributed in the hope that it will be useful,\r
- * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the\r
- * GNU General Public License for more details.\r
+ * Jalview is free software: you can redistribute it and/or\r
+ * modify it under the terms of the GNU General Public License \r
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.\r
* \r
- * You should have received a copy of the GNU General Public License\r
- * along with this program; if not, write to the Free Software\r
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA\r
+ * Jalview is distributed in the hope that it will be useful, but \r
+ * WITHOUT ANY WARRANTY; without even the implied warranty \r
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR \r
+ * PURPOSE. See the GNU General Public License for more details.\r
+ * \r
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.\r
*/\r
package jalview.schemabinding.version2.descriptors;\r
\r
- //---------------------------------/\r
- //- Imported classes and packages -/\r
+//---------------------------------/\r
+//- Imported classes and packages -/\r
//---------------------------------/\r
\r
import jalview.schemabinding.version2.SequenceSet;\r
* \r
* @version $Revision$ $Date$\r
*/\r
-public class SequenceSetDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
-\r
-\r
- //--------------------------/\r
- //- Class/Member Variables -/\r
- //--------------------------/\r
-\r
- /**\r
- * Field _elementDefinition.\r
- */\r
- private boolean _elementDefinition;\r
-\r
- /**\r
- * Field _nsPrefix.\r
- */\r
- private java.lang.String _nsPrefix;\r
-\r
- /**\r
- * Field _nsURI.\r
- */\r
- private java.lang.String _nsURI;\r
-\r
- /**\r
- * Field _xmlName.\r
- */\r
- private java.lang.String _xmlName;\r
-\r
-\r
- //----------------/\r
- //- Constructors -/\r
- //----------------/\r
-\r
- public SequenceSetDescriptor() {\r
- super();\r
- _nsURI = "www.vamsas.ac.uk/jalview/version2";\r
- _xmlName = "SequenceSet";\r
- _elementDefinition = true;\r
- \r
- //-- set grouping compositor\r
- setCompositorAsSequence();\r
- org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
- org.exolab.castor.mapping.FieldHandler handler = null;\r
- org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
- //-- initialize attribute descriptors\r
- \r
- //-- _gapChar\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_gapChar", "gapChar", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- SequenceSet target = (SequenceSet) object;\r
- return target.getGapChar();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- SequenceSet target = (SequenceSet) object;\r
- target.setGapChar( (java.lang.String) value);\r
- } catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance(java.lang.Object parent) {\r
- return null;\r
- }\r
- };\r
- desc.setHandler(handler);\r
- desc.setRequired(true);\r
- desc.setMultivalued(false);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _gapChar\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(1);\r
- { //-- local scope\r
- org.exolab.castor.xml.validators.StringValidator typeValidator;\r
- typeValidator = new org.exolab.castor.xml.validators.StringValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- typeValidator.setWhiteSpace("preserve");\r
+public class SequenceSetDescriptor extends\r
+ org.exolab.castor.xml.util.XMLClassDescriptorImpl\r
+{\r
+\r
+ // --------------------------/\r
+ // - Class/Member Variables -/\r
+ // --------------------------/\r
+\r
+ /**\r
+ * Field _elementDefinition.\r
+ */\r
+ private boolean _elementDefinition;\r
+\r
+ /**\r
+ * Field _nsPrefix.\r
+ */\r
+ private java.lang.String _nsPrefix;\r
+\r
+ /**\r
+ * Field _nsURI.\r
+ */\r
+ private java.lang.String _nsURI;\r
+\r
+ /**\r
+ * Field _xmlName.\r
+ */\r
+ private java.lang.String _xmlName;\r
+\r
+ // ----------------/\r
+ // - Constructors -/\r
+ // ----------------/\r
+\r
+ public SequenceSetDescriptor()\r
+ {\r
+ super();\r
+ _nsURI = "www.vamsas.ac.uk/jalview/version2";\r
+ _xmlName = "SequenceSet";\r
+ _elementDefinition = true;\r
+\r
+ // -- set grouping compositor\r
+ setCompositorAsSequence();\r
+ org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;\r
+ org.exolab.castor.mapping.FieldHandler handler = null;\r
+ org.exolab.castor.xml.FieldValidator fieldValidator = null;\r
+ // -- initialize attribute descriptors\r
+\r
+ // -- _gapChar\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+ java.lang.String.class, "_gapChar", "gapChar",\r
+ org.exolab.castor.xml.NodeType.Attribute);\r
+ desc.setImmutable(true);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler()\r
+ {\r
+ public java.lang.Object getValue(java.lang.Object object)\r
+ throws IllegalStateException\r
+ {\r
+ SequenceSet target = (SequenceSet) object;\r
+ return target.getGapChar();\r
+ }\r
+\r
+ public void setValue(java.lang.Object object, java.lang.Object value)\r
+ throws IllegalStateException, IllegalArgumentException\r
+ {\r
+ try\r
+ {\r
+ SequenceSet target = (SequenceSet) object;\r
+ target.setGapChar((java.lang.String) value);\r
+ } catch (java.lang.Exception ex)\r
+ {\r
+ throw new IllegalStateException(ex.toString());\r
}\r
- desc.setValidator(fieldValidator);\r
- //-- _datasetId\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_datasetId", "datasetId", org.exolab.castor.xml.NodeType.Attribute);\r
- desc.setImmutable(true);\r
- handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- SequenceSet target = (SequenceSet) object;\r
- return target.getDatasetId();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- SequenceSet target = (SequenceSet) object;\r
- target.setDatasetId( (java.lang.String) value);\r
- } catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance(java.lang.Object parent) {\r
- return null;\r
- }\r
- };\r
- desc.setHandler(handler);\r
- desc.setMultivalued(false);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _datasetId\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- { //-- local scope\r
- org.exolab.castor.xml.validators.StringValidator typeValidator;\r
- typeValidator = new org.exolab.castor.xml.validators.StringValidator();\r
- fieldValidator.setValidator(typeValidator);\r
- typeValidator.setWhiteSpace("preserve");\r
+ }\r
+\r
+ public java.lang.Object newInstance(java.lang.Object parent)\r
+ {\r
+ return null;\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setRequired(true);\r
+ desc.setMultivalued(false);\r
+ addFieldDescriptor(desc);\r
+\r
+ // -- validation code for: _gapChar\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ fieldValidator.setMinOccurs(1);\r
+ { // -- local scope\r
+ org.exolab.castor.xml.validators.StringValidator typeValidator;\r
+ typeValidator = new org.exolab.castor.xml.validators.StringValidator();\r
+ fieldValidator.setValidator(typeValidator);\r
+ typeValidator.setWhiteSpace("preserve");\r
+ }\r
+ desc.setValidator(fieldValidator);\r
+ // -- _datasetId\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+ java.lang.String.class, "_datasetId", "datasetId",\r
+ org.exolab.castor.xml.NodeType.Attribute);\r
+ desc.setImmutable(true);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler()\r
+ {\r
+ public java.lang.Object getValue(java.lang.Object object)\r
+ throws IllegalStateException\r
+ {\r
+ SequenceSet target = (SequenceSet) object;\r
+ return target.getDatasetId();\r
+ }\r
+\r
+ public void setValue(java.lang.Object object, java.lang.Object value)\r
+ throws IllegalStateException, IllegalArgumentException\r
+ {\r
+ try\r
+ {\r
+ SequenceSet target = (SequenceSet) object;\r
+ target.setDatasetId((java.lang.String) value);\r
+ } catch (java.lang.Exception ex)\r
+ {\r
+ throw new IllegalStateException(ex.toString());\r
}\r
- desc.setValidator(fieldValidator);\r
- //-- initialize element descriptors\r
- \r
- //-- _sequenceList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Sequence.class, "_sequenceList", "Sequence", org.exolab.castor.xml.NodeType.Element);\r
- handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- SequenceSet target = (SequenceSet) object;\r
- return target.getSequence();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- SequenceSet target = (SequenceSet) object;\r
- target.addSequence( (jalview.schemabinding.version2.Sequence) value);\r
- } catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {\r
- try {\r
- SequenceSet target = (SequenceSet) object;\r
- target.removeAllSequence();\r
- } catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance(java.lang.Object parent) {\r
- return new jalview.schemabinding.version2.Sequence();\r
- }\r
- };\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _sequenceList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(0);\r
- { //-- local scope\r
+ }\r
+\r
+ public java.lang.Object newInstance(java.lang.Object parent)\r
+ {\r
+ return null;\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setMultivalued(false);\r
+ addFieldDescriptor(desc);\r
+\r
+ // -- validation code for: _datasetId\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ { // -- local scope\r
+ org.exolab.castor.xml.validators.StringValidator typeValidator;\r
+ typeValidator = new org.exolab.castor.xml.validators.StringValidator();\r
+ fieldValidator.setValidator(typeValidator);\r
+ typeValidator.setWhiteSpace("preserve");\r
+ }\r
+ desc.setValidator(fieldValidator);\r
+ // -- initialize element descriptors\r
+\r
+ // -- _sequenceList\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+ jalview.schemabinding.version2.Sequence.class, "_sequenceList",\r
+ "Sequence", org.exolab.castor.xml.NodeType.Element);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler()\r
+ {\r
+ public java.lang.Object getValue(java.lang.Object object)\r
+ throws IllegalStateException\r
+ {\r
+ SequenceSet target = (SequenceSet) object;\r
+ return target.getSequence();\r
+ }\r
+\r
+ public void setValue(java.lang.Object object, java.lang.Object value)\r
+ throws IllegalStateException, IllegalArgumentException\r
+ {\r
+ try\r
+ {\r
+ SequenceSet target = (SequenceSet) object;\r
+ target\r
+ .addSequence((jalview.schemabinding.version2.Sequence) value);\r
+ } catch (java.lang.Exception ex)\r
+ {\r
+ throw new IllegalStateException(ex.toString());\r
}\r
- desc.setValidator(fieldValidator);\r
- //-- _annotationList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Annotation.class, "_annotationList", "Annotation", org.exolab.castor.xml.NodeType.Element);\r
- handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- SequenceSet target = (SequenceSet) object;\r
- return target.getAnnotation();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- SequenceSet target = (SequenceSet) object;\r
- target.addAnnotation( (jalview.schemabinding.version2.Annotation) value);\r
- } catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {\r
- try {\r
- SequenceSet target = (SequenceSet) object;\r
- target.removeAllAnnotation();\r
- } catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance(java.lang.Object parent) {\r
- return new jalview.schemabinding.version2.Annotation();\r
- }\r
- };\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _annotationList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(0);\r
- { //-- local scope\r
+ }\r
+\r
+ public void resetValue(Object object) throws IllegalStateException,\r
+ IllegalArgumentException\r
+ {\r
+ try\r
+ {\r
+ SequenceSet target = (SequenceSet) object;\r
+ target.removeAllSequence();\r
+ } catch (java.lang.Exception ex)\r
+ {\r
+ throw new IllegalStateException(ex.toString());\r
}\r
- desc.setValidator(fieldValidator);\r
- //-- _sequenceSetPropertiesList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.SequenceSetProperties.class, "_sequenceSetPropertiesList", "sequenceSetProperties", org.exolab.castor.xml.NodeType.Element);\r
- handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- SequenceSet target = (SequenceSet) object;\r
- return target.getSequenceSetProperties();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- SequenceSet target = (SequenceSet) object;\r
- target.addSequenceSetProperties( (jalview.schemabinding.version2.SequenceSetProperties) value);\r
- } catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {\r
- try {\r
- SequenceSet target = (SequenceSet) object;\r
- target.removeAllSequenceSetProperties();\r
- } catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance(java.lang.Object parent) {\r
- return new jalview.schemabinding.version2.SequenceSetProperties();\r
- }\r
- };\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _sequenceSetPropertiesList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(0);\r
- { //-- local scope\r
+ }\r
+\r
+ public java.lang.Object newInstance(java.lang.Object parent)\r
+ {\r
+ return new jalview.schemabinding.version2.Sequence();\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
+ desc.setMultivalued(true);\r
+ addFieldDescriptor(desc);\r
+\r
+ // -- validation code for: _sequenceList\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ fieldValidator.setMinOccurs(0);\r
+ { // -- local scope\r
+ }\r
+ desc.setValidator(fieldValidator);\r
+ // -- _annotationList\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+ jalview.schemabinding.version2.Annotation.class,\r
+ "_annotationList", "Annotation",\r
+ org.exolab.castor.xml.NodeType.Element);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler()\r
+ {\r
+ public java.lang.Object getValue(java.lang.Object object)\r
+ throws IllegalStateException\r
+ {\r
+ SequenceSet target = (SequenceSet) object;\r
+ return target.getAnnotation();\r
+ }\r
+\r
+ public void setValue(java.lang.Object object, java.lang.Object value)\r
+ throws IllegalStateException, IllegalArgumentException\r
+ {\r
+ try\r
+ {\r
+ SequenceSet target = (SequenceSet) object;\r
+ target\r
+ .addAnnotation((jalview.schemabinding.version2.Annotation) value);\r
+ } catch (java.lang.Exception ex)\r
+ {\r
+ throw new IllegalStateException(ex.toString());\r
}\r
- desc.setValidator(fieldValidator);\r
- //-- _alcodonFrameList\r
- desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.AlcodonFrame.class, "_alcodonFrameList", "AlcodonFrame", org.exolab.castor.xml.NodeType.Element);\r
- handler = new org.exolab.castor.xml.XMLFieldHandler() {\r
- public java.lang.Object getValue( java.lang.Object object ) \r
- throws IllegalStateException\r
- {\r
- SequenceSet target = (SequenceSet) object;\r
- return target.getAlcodonFrame();\r
- }\r
- public void setValue( java.lang.Object object, java.lang.Object value) \r
- throws IllegalStateException, IllegalArgumentException\r
- {\r
- try {\r
- SequenceSet target = (SequenceSet) object;\r
- target.addAlcodonFrame( (jalview.schemabinding.version2.AlcodonFrame) value);\r
- } catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {\r
- try {\r
- SequenceSet target = (SequenceSet) object;\r
- target.removeAllAlcodonFrame();\r
- } catch (java.lang.Exception ex) {\r
- throw new IllegalStateException(ex.toString());\r
- }\r
- }\r
- public java.lang.Object newInstance(java.lang.Object parent) {\r
- return new jalview.schemabinding.version2.AlcodonFrame();\r
- }\r
- };\r
- desc.setHandler(handler);\r
- desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
- desc.setMultivalued(true);\r
- addFieldDescriptor(desc);\r
- \r
- //-- validation code for: _alcodonFrameList\r
- fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
- fieldValidator.setMinOccurs(0);\r
- { //-- local scope\r
+ }\r
+\r
+ public void resetValue(Object object) throws IllegalStateException,\r
+ IllegalArgumentException\r
+ {\r
+ try\r
+ {\r
+ SequenceSet target = (SequenceSet) object;\r
+ target.removeAllAnnotation();\r
+ } catch (java.lang.Exception ex)\r
+ {\r
+ throw new IllegalStateException(ex.toString());\r
}\r
- desc.setValidator(fieldValidator);\r
+ }\r
+\r
+ public java.lang.Object newInstance(java.lang.Object parent)\r
+ {\r
+ return new jalview.schemabinding.version2.Annotation();\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
+ desc.setMultivalued(true);\r
+ addFieldDescriptor(desc);\r
+\r
+ // -- validation code for: _annotationList\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ fieldValidator.setMinOccurs(0);\r
+ { // -- local scope\r
}\r
+ desc.setValidator(fieldValidator);\r
+ // -- _sequenceSetPropertiesList\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+ jalview.schemabinding.version2.SequenceSetProperties.class,\r
+ "_sequenceSetPropertiesList", "sequenceSetProperties",\r
+ org.exolab.castor.xml.NodeType.Element);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler()\r
+ {\r
+ public java.lang.Object getValue(java.lang.Object object)\r
+ throws IllegalStateException\r
+ {\r
+ SequenceSet target = (SequenceSet) object;\r
+ return target.getSequenceSetProperties();\r
+ }\r
\r
+ public void setValue(java.lang.Object object, java.lang.Object value)\r
+ throws IllegalStateException, IllegalArgumentException\r
+ {\r
+ try\r
+ {\r
+ SequenceSet target = (SequenceSet) object;\r
+ target\r
+ .addSequenceSetProperties((jalview.schemabinding.version2.SequenceSetProperties) value);\r
+ } catch (java.lang.Exception ex)\r
+ {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
\r
- //-----------/\r
- //- Methods -/\r
- //-----------/\r
+ public void resetValue(Object object) throws IllegalStateException,\r
+ IllegalArgumentException\r
+ {\r
+ try\r
+ {\r
+ SequenceSet target = (SequenceSet) object;\r
+ target.removeAllSequenceSetProperties();\r
+ } catch (java.lang.Exception ex)\r
+ {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
\r
- /**\r
- * Method getAccessMode.\r
- * \r
- * @return the access mode specified for this class.\r
- */\r
- public org.exolab.castor.mapping.AccessMode getAccessMode(\r
- ) {\r
- return null;\r
- }\r
+ public java.lang.Object newInstance(java.lang.Object parent)\r
+ {\r
+ return new jalview.schemabinding.version2.SequenceSetProperties();\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
+ desc.setMultivalued(true);\r
+ addFieldDescriptor(desc);\r
\r
- /**\r
- * Method getIdentity.\r
- * \r
- * @return the identity field, null if this class has no\r
- * identity.\r
- */\r
- public org.exolab.castor.mapping.FieldDescriptor getIdentity(\r
- ) {\r
- return super.getIdentity();\r
+ // -- validation code for: _sequenceSetPropertiesList\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ fieldValidator.setMinOccurs(0);\r
+ { // -- local scope\r
}\r
+ desc.setValidator(fieldValidator);\r
+ // -- _alcodonFrameList\r
+ desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(\r
+ jalview.schemabinding.version2.AlcodonFrame.class,\r
+ "_alcodonFrameList", "AlcodonFrame",\r
+ org.exolab.castor.xml.NodeType.Element);\r
+ handler = new org.exolab.castor.xml.XMLFieldHandler()\r
+ {\r
+ public java.lang.Object getValue(java.lang.Object object)\r
+ throws IllegalStateException\r
+ {\r
+ SequenceSet target = (SequenceSet) object;\r
+ return target.getAlcodonFrame();\r
+ }\r
\r
- /**\r
- * Method getJavaClass.\r
- * \r
- * @return the Java class represented by this descriptor.\r
- */\r
- public java.lang.Class getJavaClass(\r
- ) {\r
- return jalview.schemabinding.version2.SequenceSet.class;\r
- }\r
+ public void setValue(java.lang.Object object, java.lang.Object value)\r
+ throws IllegalStateException, IllegalArgumentException\r
+ {\r
+ try\r
+ {\r
+ SequenceSet target = (SequenceSet) object;\r
+ target\r
+ .addAlcodonFrame((jalview.schemabinding.version2.AlcodonFrame) value);\r
+ } catch (java.lang.Exception ex)\r
+ {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
\r
- /**\r
- * Method getNameSpacePrefix.\r
- * \r
- * @return the namespace prefix to use when marshaling as XML.\r
- */\r
- public java.lang.String getNameSpacePrefix(\r
- ) {\r
- return _nsPrefix;\r
- }\r
+ public void resetValue(Object object) throws IllegalStateException,\r
+ IllegalArgumentException\r
+ {\r
+ try\r
+ {\r
+ SequenceSet target = (SequenceSet) object;\r
+ target.removeAllAlcodonFrame();\r
+ } catch (java.lang.Exception ex)\r
+ {\r
+ throw new IllegalStateException(ex.toString());\r
+ }\r
+ }\r
\r
- /**\r
- * Method getNameSpaceURI.\r
- * \r
- * @return the namespace URI used when marshaling and\r
- * unmarshaling as XML.\r
- */\r
- public java.lang.String getNameSpaceURI(\r
- ) {\r
- return _nsURI;\r
- }\r
+ public java.lang.Object newInstance(java.lang.Object parent)\r
+ {\r
+ return new jalview.schemabinding.version2.AlcodonFrame();\r
+ }\r
+ };\r
+ desc.setHandler(handler);\r
+ desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
+ desc.setMultivalued(true);\r
+ addFieldDescriptor(desc);\r
\r
- /**\r
- * Method getValidator.\r
- * \r
- * @return a specific validator for the class described by this\r
- * ClassDescriptor.\r
- */\r
- public org.exolab.castor.xml.TypeValidator getValidator(\r
- ) {\r
- return this;\r
+ // -- validation code for: _alcodonFrameList\r
+ fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
+ fieldValidator.setMinOccurs(0);\r
+ { // -- local scope\r
}\r
+ desc.setValidator(fieldValidator);\r
+ }\r
\r
- /**\r
- * Method getXMLName.\r
- * \r
- * @return the XML Name for the Class being described.\r
- */\r
- public java.lang.String getXMLName(\r
- ) {\r
- return _xmlName;\r
- }\r
+ // -----------/\r
+ // - Methods -/\r
+ // -----------/\r
\r
- /**\r
- * Method isElementDefinition.\r
- * \r
- * @return true if XML schema definition of this Class is that\r
- * of a global\r
- * element or element with anonymous type definition.\r
- */\r
- public boolean isElementDefinition(\r
- ) {\r
- return _elementDefinition;\r
- }\r
+ /**\r
+ * Method getAccessMode.\r
+ * \r
+ * @return the access mode specified for this class.\r
+ */\r
+ public org.exolab.castor.mapping.AccessMode getAccessMode()\r
+ {\r
+ return null;\r
+ }\r
+\r
+ /**\r
+ * Method getIdentity.\r
+ * \r
+ * @return the identity field, null if this class has no identity.\r
+ */\r
+ public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
+ {\r
+ return super.getIdentity();\r
+ }\r
+\r
+ /**\r
+ * Method getJavaClass.\r
+ * \r
+ * @return the Java class represented by this descriptor.\r
+ */\r
+ public java.lang.Class getJavaClass()\r
+ {\r
+ return jalview.schemabinding.version2.SequenceSet.class;\r
+ }\r
+\r
+ /**\r
+ * Method getNameSpacePrefix.\r
+ * \r
+ * @return the namespace prefix to use when marshaling as XML.\r
+ */\r
+ public java.lang.String getNameSpacePrefix()\r
+ {\r
+ return _nsPrefix;\r
+ }\r
+\r
+ /**\r
+ * Method getNameSpaceURI.\r
+ * \r
+ * @return the namespace URI used when marshaling and unmarshaling as XML.\r
+ */\r
+ public java.lang.String getNameSpaceURI()\r
+ {\r
+ return _nsURI;\r
+ }\r
+\r
+ /**\r
+ * Method getValidator.\r
+ * \r
+ * @return a specific validator for the class described by this\r
+ * ClassDescriptor.\r
+ */\r
+ public org.exolab.castor.xml.TypeValidator getValidator()\r
+ {\r
+ return this;\r
+ }\r
+\r
+ /**\r
+ * Method getXMLName.\r
+ * \r
+ * @return the XML Name for the Class being described.\r
+ */\r
+ public java.lang.String getXMLName()\r
+ {\r
+ return _xmlName;\r
+ }\r
+\r
+ /**\r
+ * Method isElementDefinition.\r
+ * \r
+ * @return true if XML schema definition of this Class is that of a global\r
+ * element or element with anonymous type definition.\r
+ */\r
+ public boolean isElementDefinition()\r
+ {\r
+ return _elementDefinition;\r
+ }\r
\r
}\r
git://source.jalview.org / jalview.git / blobdiff