JAL-2403 ScoreModelI now DistanceModelI, ScoreMatrix delegate of

[jalview.git] / src / jalview / schemes / Blosum62ColourScheme.java

diff --git a/src/jalview/schemes/Blosum62ColourScheme.java b/src/jalview/schemes/Blosum62ColourScheme.java
index 58e12b7..8ac8731 100755 (executable)
--- a/src/jalview/schemes/Blosum62ColourScheme.java
+++ b/src/jalview/schemes/Blosum62ColourScheme.java
@@ -20,7 +20,7 @@
  */
 package jalview.schemes;
 
-import jalview.analysis.scoremodels.PairwiseSeqScoreModel;
+import jalview.analysis.scoremodels.PairwiseScoreModelI;
 import jalview.analysis.scoremodels.ScoreModels;
 import jalview.datamodel.AnnotatedCollectionI;
 import jalview.datamodel.SequenceCollectionI;
@@ -55,7 +55,7 @@ public class Blosum62ColourScheme extends ResidueColourScheme
   public Color findColour(char res, int j, SequenceI seq,
           String consensusResidue, float pid)
   {
-    PairwiseSeqScoreModel sm = ScoreModels.getInstance().getBlosum62();
+    PairwiseScoreModelI sm = ScoreModels.getInstance().getBlosum62();
 
     /*
      * compare as upper case; note consensusResidue is 
@@ -84,7 +84,6 @@ public class Blosum62ColourScheme extends ResidueColourScheme
       for (char consensus : consensusResidue.toCharArray())
       {
         score += sm.getPairwiseScore(consensus, res);
-        // score += ResidueProperties.getBLOSUM62(consensus, res);
       }
 
       if (score > 0)