Merge branch 'develop' into features/r2_11_2_alphafold/JAL-2349_JAL-3855

[jalview.git] / src / jalview / schemes / NucleotideAmbiguityColourScheme.java

diff --git a/src/jalview/schemes/NucleotideAmbiguityColourScheme.java b/src/jalview/schemes/NucleotideAmbiguityColourScheme.java
new file mode 100644 (file)
index 0000000..dd42db3
--- /dev/null
+++ b/src/jalview/schemes/NucleotideAmbiguityColourScheme.java
@@ -0,0 +1,40 @@
+package jalview.schemes;
+
+import jalview.api.AlignViewportI;
+import jalview.datamodel.AnnotatedCollectionI;
+
+public class NucleotideAmbiguityColourScheme extends ResidueColourScheme
+{
+  /**
+   * Creates a new NucleotideColourScheme object.
+   */
+  public NucleotideAmbiguityColourScheme()
+  {
+    super(ResidueProperties.nucleotideIndex,
+            ResidueProperties.nucleotideAmbiguity);
+  }
+
+  @Override
+  public boolean isNucleotideSpecific()
+  {
+    return true;
+  }
+
+  @Override
+  public String getSchemeName()
+  {
+    return JalviewColourScheme.NucleotideAmbiguity.toString();
+  }
+
+  /**
+   * Returns a new instance of this colour scheme with which the given data may
+   * be coloured
+   */
+  @Override
+  public ColourSchemeI getInstance(AlignViewportI view,
+          AnnotatedCollectionI coll)
+  {
+    return new NucleotideAmbiguityColourScheme();
+  }
+
+}