Merge branch 'test_paolo_JAL-1065' into Tcoffee_JAL-1065

[jalview.git] / src / jalview / schemes / NucleotideColourScheme.java

diff --git a/src/jalview/schemes/NucleotideColourScheme.java b/src/jalview/schemes/NucleotideColourScheme.java
index df4d9a9..1de5764 100755 (executable)
--- a/src/jalview/schemes/NucleotideColourScheme.java
+++ b/src/jalview/schemes/NucleotideColourScheme.java
@@ -17,6 +17,8 @@
  */
 package jalview.schemes;
 
+import jalview.datamodel.SequenceI;
+
 import java.awt.Color;
 
 /**
@@ -61,7 +63,7 @@ public class NucleotideColourScheme extends ResidueColourScheme
    * @return DOCUMENT ME!
    */
   @Override
-  public Color findColour(char c, int j, int sequenceIndex)
+  public Color findColour(char c, int j, SequenceI seq)
   {
     Color currentColour;
     if ((threshold == 0) || aboveThreshold(c, j))