Merge branch 'develop' into bug/JAL-2225mapMultipleChains

[jalview.git] / src / jalview / schemes / RNAHelicesColourChooser.java

diff --git a/src/jalview/schemes/RNAHelicesColourChooser.java b/src/jalview/schemes/RNAHelicesColourChooser.java
index 15cb157..9809fa9 100644 (file)
--- a/src/jalview/schemes/RNAHelicesColourChooser.java
+++ b/src/jalview/schemes/RNAHelicesColourChooser.java
@@ -58,7 +58,7 @@ public class RNAHelicesColourChooser
     oldcs = av.getGlobalColourScheme();
     if (av.getAlignment().getGroups() != null)
     {
-      oldgroupColours = new Hashtable<SequenceGroup, ColourSchemeI>();
+      oldgroupColours = new Hashtable<>();
       for (SequenceGroup sg : ap.getAlignment().getGroups())
       {
         if (sg.getColourScheme() != null)
@@ -71,7 +71,7 @@ public class RNAHelicesColourChooser
     this.ap = ap;
 
     adjusting = true;
-    Vector<String> list = new Vector<String>();
+    Vector<String> list = new Vector<>();
     int index = 1;
     AlignmentAnnotation[] anns = av.getAlignment().getAlignmentAnnotation();
     if (anns != null)
@@ -105,6 +105,6 @@ public class RNAHelicesColourChooser
 
     av.setGlobalColourScheme(rhc);
 
-    ap.paintAlignment(true);
+    ap.paintAlignment(true, true);
   }
 }