Merge branch 'test_paolo_JAL-1065' into Tcoffee_JAL-1065

[jalview.git] / src / jalview / schemes / ResidueColourScheme.java

diff --git a/src/jalview/schemes/ResidueColourScheme.java b/src/jalview/schemes/ResidueColourScheme.java
index cc7f0d8..ea9e44b 100755 (executable)
--- a/src/jalview/schemes/ResidueColourScheme.java
+++ b/src/jalview/schemes/ResidueColourScheme.java
@@ -19,6 +19,8 @@ package jalview.schemes;
 
 import jalview.analysis.AAFrequency;
 import jalview.analysis.Conservation;
+import jalview.datamodel.AnnotatedCollectionI;
+import jalview.datamodel.SequenceI;
 
 import java.awt.Color;
 import java.util.Hashtable;
@@ -83,7 +85,7 @@ public class ResidueColourScheme implements ColourSchemeI
   }
 
   @Override
-  public Color findColour(char c, int j, int sequenceIndex)
+  public Color findColour(char c, int j, SequenceI seq)
   {
     Color currentColour;
 
@@ -103,6 +105,7 @@ public class ResidueColourScheme implements ColourSchemeI
 
     return currentColour;
   }
+  @Override public void alignmentChanged(AnnotatedCollectionI alignment) {};
 
   /**
    * Get the percentage threshold for this colour scheme