Merge branch 'develop' into features/JAL-1705_ensembl

[jalview.git] / src / jalview / structure / SecondaryStructureListener.java

diff --git a/src/jalview/structure/SecondaryStructureListener.java b/src/jalview/structure/SecondaryStructureListener.java
index 5d5d880..a7384f8 100644 (file)
--- a/src/jalview/structure/SecondaryStructureListener.java
+++ b/src/jalview/structure/SecondaryStructureListener.java
@@ -20,11 +20,20 @@
  */
 package jalview.structure;
 
-import jalview.datamodel.*;
+import jalview.datamodel.SequenceI;
 
 public interface SecondaryStructureListener
 {
   // TODO - redefine to allow RNA mouseovers to be passed back correctly to
   // listeners
-  public void mouseOverSequence(SequenceI sequence, int index);
+  /**
+   * act on a mouseover event
+   * 
+   * @param sequence
+   * @param index
+   *          the aligned sequence position (base 0)
+   * @param position
+   *          the dataset sequence position (base 1)
+   */
+  public void mouseOverSequence(SequenceI sequence, int index, int position);
 }