JAL-2089 patch broken merge to master for Release 2.10.0b1

[jalview.git] / src / jalview / structure / SecondaryStructureListener.java

diff --git a/src/jalview/structure/SecondaryStructureListener.java b/src/jalview/structure/SecondaryStructureListener.java
index 2402f87..a7384f8 100644 (file)
--- a/src/jalview/structure/SecondaryStructureListener.java
+++ b/src/jalview/structure/SecondaryStructureListener.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -20,11 +20,20 @@
  */
 package jalview.structure;
 
-import jalview.datamodel.*;
+import jalview.datamodel.SequenceI;
 
 public interface SecondaryStructureListener
 {
   // TODO - redefine to allow RNA mouseovers to be passed back correctly to
   // listeners
-  public void mouseOverSequence(SequenceI sequence, int index);
+  /**
+   * act on a mouseover event
+   * 
+   * @param sequence
+   * @param index
+   *          the aligned sequence position (base 0)
+   * @param position
+   *          the dataset sequence position (base 1)
+   */
+  public void mouseOverSequence(SequenceI sequence, int index, int position);
 }