Merge branch 'develop' into spike/JAL-4047/JAL-4048_columns_in_sequenceID

[jalview.git] / src / jalview / util / Comparison.java

diff --git a/src/jalview/util/Comparison.java b/src/jalview/util/Comparison.java
index 9fea705..e9ff931 100644 (file)
--- a/src/jalview/util/Comparison.java
+++ b/src/jalview/util/Comparison.java
@@ -337,9 +337,9 @@ public class Comparison
         // a long sequence.
         // check for at least 55% nucleotide, and nucleotide and ambiguity codes
         // (including N) must make up 95%
-        return ntCount * 100 > NUCLEOTIDE_COUNT_PERCENT * allCount
+        return ntCount * 100 >= NUCLEOTIDE_COUNT_PERCENT * allCount
                 && 100 * (ntCount + nCount
-                        + ntaCount) > NUCLEOTIDE_COUNT_LONG_SEQUENCE_AMBIGUITY_PERCENT
+                        + ntaCount) >= NUCLEOTIDE_COUNT_LONG_SEQUENCE_AMBIGUITY_PERCENT
                                 * allCount;
       }
       else if (allCount > NUCLEOTIDE_COUNT_VERY_SHORT_SEQUENCE)
@@ -347,7 +347,7 @@ public class Comparison
         // a short sequence.
         // check if a short sequence is at least 55% nucleotide and the rest of
         // the symbols are all X or all N
-        if (ntCount * 100 > NUCLEOTIDE_COUNT_PERCENT * allCount
+        if (ntCount * 100 >= NUCLEOTIDE_COUNT_PERCENT * allCount
                 && (nCount == aaCount || xCount == aaCount))
         {
           return true;