import jalview.analysis.AnnotationSorter.SequenceAnnotationOrder;
import jalview.analysis.Conservation;
import jalview.analysis.TreeModel;
-import jalview.api.AlignCalcManagerI;
import jalview.api.AlignCalcManagerI2;
import jalview.api.AlignCalcWorkerI;
import jalview.api.AlignExportSettingsI;
import jalview.util.MappingUtils;
import jalview.util.MessageManager;
import jalview.viewmodel.styles.ViewStyle;
-import jalview.workers.AlignCalcManager;
import jalview.workers.AlignCalcManager2;
import jalview.workers.ComplementConsensusThread;
import jalview.workers.ConsensusThread;