protected AlignmentViewPanel ap;
- protected List<AlignmentAnnotation> ourAnnots = null;
+ protected List<AlignmentAnnotation> ourAnnots;
public AlignCalcWorker(AlignViewportI alignViewport,
AlignmentViewPanel alignPanel)
}
+ @Override
public boolean involves(AlignmentAnnotation i)
{
return ourAnnots != null && ourAnnots.contains(i);
}
/**
- * permanently remove from the alignment all annotation rows managed by this
+ * Permanently removes from the alignment all annotation rows managed by this
* worker
*/
@Override
- public void removeOurAnnotation()
+ public void removeAnnotation()
{
if (ourAnnots != null && alignViewport != null)
{
alignment.deleteAnnotation(aa, true);
}
}
+ ourAnnots.clear();
}
}
// TODO: allow GUI to query workers associated with annotation to add items to