JAL-98 with the two types missing from last commit Profiles[I] !

[jalview.git] / src / jalview / workers / ConsensusThread.java

diff --git a/src/jalview/workers/ConsensusThread.java b/src/jalview/workers/ConsensusThread.java
index b6c7a91..debe45d 100644 (file)
--- a/src/jalview/workers/ConsensusThread.java
+++ b/src/jalview/workers/ConsensusThread.java
@@ -200,7 +200,8 @@ public class ConsensusThread extends AlignCalcWorker
   {
 
     long nseq = getSequences().length;
-    AAFrequency.completeConsensus(consensusAnnotation, hconsensus, 0,
+    AAFrequency.completeConsensus(consensusAnnotation, hconsensus,
+            hconsensus.getStartColumn(),
             hconsensus.getEndColumn() + 1,
             alignViewport.isIgnoreGapsConsensus(),
             alignViewport.isShowSequenceLogo(), nseq);