* view that this job was associated with
*/
protected AlignmentI currentView = null;
+
/**
* feature settings from view that job was associated with
*/
protected FeatureRendererSettings featureSettings = null;
+
/**
* metadata about this web service
*/
protected WebserviceInfo wsInfo = null;
+
/**
* original input data for this job
*/
protected AlignmentView input = null;
+
/**
* dataset sequence relationships to be propagated onto new results
*/
protected AlignedCodonFrame[] codonframe = null;
+
/**
* are there jobs still running in this thread.
*/
protected boolean jobComplete = false;
+
/**
* one or more jobs being managed by this thread.
*/
protected AWsJob jobs[] = null;
+
/**
* full name of service
*/
protected String WebServiceName = null;
+
protected char defGapChar = '-';
+
/**
* header prepended to all output from job
*/
protected String OutputHeader;
/**
- * only used when reporting a web service out of memory error - the job ID will be concatenated to the URL
+ * only used when reporting a web service out of memory error - the job ID
+ * will be concatenated to the URL
*/
protected String WsUrl = null;
/**
- * generic web service job/subjob poll loop
+ * generic web service job/subjob poll loop
*/
public void run()
{
}
}
-
public AWSThread()
{
super();
/**
* helper function to conserve dataset references to sequence objects returned
* from web services 1. Propagates AlCodonFrame data from
- * <code>codonframe</code> to <code>al</code>
- * TODO: refactor to datamodel
+ * <code>codonframe</code> to <code>al</code> TODO: refactor to datamodel
+ *
* @param al
*/
public void propagateDatasetMappings(Alignment al)