/*
-* Jalview - A Sequence Alignment Editor and Viewer
-* Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
-*
-* This program is free software; you can redistribute it and/or
-* modify it under the terms of the GNU General Public License
-* as published by the Free Software Foundation; either version 2
-* of the License, or (at your option) any later version.
-*
-* This program is distributed in the hope that it will be useful,
-* but WITHOUT ANY WARRANTY; without even the implied warranty of
-* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
-* GNU General Public License for more details.
-*
-* You should have received a copy of the GNU General Public License
-* along with this program; if not, write to the Free Software
-* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
-*/\r
-package jalview.ws;\r
-\r
-import jalview.gui.WebserviceInfo;\r
-\r
-\r
-public class WSClient {\r
- /**
-
-* MsaWSClient
-*
-* @param msa SequenceI[]
-*/\r
- protected String WebServiceName;\r
- protected String WebServiceJobTitle;\r
- protected String WebServiceReference;\r
- protected String WsURL;\r
- protected WebserviceInfo wsInfo;\r
- int jobsRunning = 0;\r
-\r
- public WSClient() {\r
- }\r
-}\r
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
+ */
+package jalview.ws;
+
+import javax.swing.JMenu;
+
+import ext.vamsas.*;
+import jalview.gui.*;
+
+public abstract class WSClient implements WSMenuEntryProviderI
+{
+ /**
+ * WSClient holds the basic attributes that are displayed to the user for all
+ * jalview web service clients
+ */
+ /**
+ * displayed name for this web service
+ */
+ protected String WebServiceName;
+
+ /**
+ * specific job title (e.g. 'ClustalW Alignment of Selection from Aligment
+ * from Cut and Paste input')
+ */
+ protected String WebServiceJobTitle;
+
+ /**
+ * String giving additional information such as method citations for this
+ * service
+ */
+ protected String WebServiceReference;
+
+ /**
+ * Service endpoint
+ */
+ protected String WsURL;
+
+ /**
+ * Web service information used to initialise the WSClient attributes
+ */
+ protected WebserviceInfo wsInfo;
+
+ /**
+ * total number of jobs managed by this web service client instance.
+ */
+ int jobsRunning = 0;
+
+ /**
+ * TODO: this is really service metadata, and should be moved elsewhere.
+ * mappings between abstract interface names and menu entries
+ */
+ protected java.util.Hashtable ServiceActions;
+ {
+ ServiceActions = new java.util.Hashtable();
+ ServiceActions.put("MsaWS", "Multiple Sequence Alignment");
+ ServiceActions.put("SecStrPred", "Secondary Structure Prediction");
+ };
+
+ public WSClient()
+ {
+ }
+
+ /**
+ * initialise WSClient service information attributes from the service handle
+ *
+ * @param sh
+ * @return the service instance information GUI for this client and job.
+ */
+ protected WebserviceInfo setWebService(ServiceHandle sh)
+ {
+ return setWebService(sh, false);
+ }
+
+ /**
+ * original service handle that this client was derived from
+ */
+ ServiceHandle serviceHandle = null;
+
+ /**
+ * initialise WSClient service information attributes from the service handle
+ *
+ * @param sh
+ * @param headless
+ * true implies no GUI objects will be created.
+ * @return the service instance information GUI for this client and job.
+ */
+ protected WebserviceInfo setWebService(ServiceHandle sh, boolean headless)
+ {
+ WebServiceName = sh.getName();
+ if (ServiceActions.containsKey(sh.getAbstractName()))
+ {
+ WebServiceJobTitle = sh.getName(); // TODO: control sh.Name specification
+ // properly
+ // add this for short names. +(String)
+ // ServiceActions.get(sh.getAbstractName());
+ }
+ else
+ {
+ WebServiceJobTitle = sh.getAbstractName() + " using " + sh.getName();
+
+ }
+ WebServiceReference = sh.getDescription();
+ WsURL = sh.getEndpointURL();
+ WebserviceInfo wsInfo = null;
+ if (!headless)
+ {
+ wsInfo = new WebserviceInfo(WebServiceJobTitle, WebServiceReference);
+ }
+ return wsInfo;
+ }
+
+ /**
+ * convenience method to pass the serviceHandle reference that instantiated
+ * this service on to the menu entry constructor
+ *
+ * @param wsmenu
+ * the menu to which any menu entries/sub menus are to be attached
+ * @param alignFrame
+ * the alignFrame instance that provides input data for the service
+ */
+ public void attachWSMenuEntry(JMenu wsmenu, final AlignFrame alignFrame)
+ {
+ if (serviceHandle == null)
+ {
+ throw new Error(
+ "IMPLEMENTATION ERROR: cannot attach WS Menu Entry without service handle reference!");
+ }
+ attachWSMenuEntry(wsmenu, serviceHandle, alignFrame);
+ }
+
+ /**
+ * method implemented by each WSClient implementation that creates menu
+ * entries that enact their service using data from alignFrame.
+ *
+ * @param wsmenu
+ * where new menu entries (and submenus) are to be attached
+ * @param serviceHandle
+ * the serviceHandle document for the service that entries are
+ * created for
+ * @param alignFrame
+ */
+ public abstract void attachWSMenuEntry(JMenu wsmenu,
+ final ServiceHandle serviceHandle, final AlignFrame alignFrame);
+}
git://source.jalview.org / jalview.git / blobdiff