JAL-3692 parse multiline feature qualifiers and escaped quotes

[jalview.git] / src / jalview / ws / dbsources / EmblFlatfileSource.java

diff --git a/src/jalview/ws/dbsources/EmblFlatfileSource.java b/src/jalview/ws/dbsources/EmblFlatfileSource.java
index 2353f22..6536958 100644 (file)
--- a/src/jalview/ws/dbsources/EmblFlatfileSource.java
+++ b/src/jalview/ws/dbsources/EmblFlatfileSource.java
@@ -73,12 +73,12 @@ public abstract class EmblFlatfileSource extends EbiFileRetrievedProxy
     try
     {
       reply = dbFetch.fetchDataAsFile(
-              dbName.toLowerCase() + ":" + query.trim(), null, "txt");
+              dbName.toLowerCase() + ":" + query.trim(), null, "gz");
     } catch (Exception e)
     {
       stopQuery();
       throw new Exception(
-              String.format("EBI EMBL XML retrieval failed for %s:%s",
+              String.format("EBI EMBL retrieval failed for %s:%s",
                       dbName.toLowerCase(), query.trim()),
               e);
     }
@@ -112,4 +112,10 @@ public abstract class EmblFlatfileSource extends EbiFileRetrievedProxy
     stopQuery();
     return al;
   }
+
+  @Override
+  public boolean isDnaCoding()
+  {
+    return true;
+  }
 }