Merge branch 'develop' into releases/Release_2_10_2_Branch

[jalview.git] / src / jalview / ws / dbsources / Uniprot.java

diff --git a/src/jalview/ws/dbsources/Uniprot.java b/src/jalview/ws/dbsources/Uniprot.java
index 3afe8ec..30808fb 100644 (file)
--- a/src/jalview/ws/dbsources/Uniprot.java
+++ b/src/jalview/ws/dbsources/Uniprot.java
@@ -166,7 +166,8 @@ public class Uniprot extends DbSourceProxyImpl
       // uniprotkb dbname changed introduced december 2008
       File file = ebi.fetchDataAsFile("uniprotkb:" + queries, "uniprotxml",
               "xml");
-      Vector<UniprotEntry> entries = getUniprotEntries(new FileReader(file));
+      Vector<UniprotEntry> entries = getUniprotEntries(
+              new FileReader(file));
 
       if (entries != null)
       {
@@ -196,8 +197,8 @@ public class Uniprot extends DbSourceProxyImpl
   public SequenceI uniprotEntryToSequenceI(UniprotEntry entry)
   {
     String id = getUniprotEntryId(entry);
-    SequenceI sequence = new Sequence(id, entry.getUniprotSequence()
-            .getContent());
+    SequenceI sequence = new Sequence(id,
+            entry.getUniprotSequence().getContent());
     sequence.setDescription(getUniprotEntryDescription(entry));
 
     final String dbVersion = getDbVersion();
@@ -248,8 +249,8 @@ public class Uniprot extends DbSourceProxyImpl
         String cdsId = (String) pdb.getProperty("protein sequence ID");
         if (cdsId != null && cdsId.trim().length() > 0)
         {
-          dbr = new DBRefEntry(DBRefSource.ENSEMBL, DBRefSource.UNIPROT
-                  + ":" + dbVersion, cdsId.trim());
+          dbr = new DBRefEntry(DBRefSource.ENSEMBL,
+                  DBRefSource.UNIPROT + ":" + dbVersion, cdsId.trim());
           dbRefs.add(dbr);
 
         }