Merge branch 'develop' into spike/JAL-4047/JAL-4048_columns_in_sequenceID

[jalview.git] / src / jalview / ws / ebi / EBIFetchClient.java

diff --git a/src/jalview/ws/ebi/EBIFetchClient.java b/src/jalview/ws/ebi/EBIFetchClient.java
index 65b9655..3eef460 100644 (file)
--- a/src/jalview/ws/ebi/EBIFetchClient.java
+++ b/src/jalview/ws/ebi/EBIFetchClient.java
@@ -136,8 +136,8 @@ public class EBIFetchClient
     String database = parseIds(ids, querystring);
     if (database == null)
     {
-      System.err.println("Invalid Query string : '" + ids + "'");
-      System.err.println("Should be of form 'dbname:q1;q2;q3;q4'");
+      jalview.bin.Console.errPrintln("Invalid Query string : '" + ids + "'");
+      jalview.bin.Console.errPrintln("Should be of form 'dbname:q1;q2;q3;q4'");
       return null;
     }
 
@@ -227,11 +227,11 @@ public class EBIFetchClient
         }
         return (String[]) arl.toArray();
       }
-      System.err.println(
+      jalview.bin.Console.errPrintln(
               "Warning: response code " + responseCode + " for " + url);
     } catch (OutOfMemoryError er)
     {
-      System.out.println("OUT OF MEMORY DOWNLOADING QUERY FROM " + database
+      jalview.bin.Console.outPrintln("OUT OF MEMORY DOWNLOADING QUERY FROM " + database
               + ":\n" + ids);
       throw er;
     } catch (Exception ex)
@@ -239,7 +239,7 @@ public class EBIFetchClient
       if (!ex.getMessage().startsWith(
               "uk.ac.ebi.jdbfetch.exceptions.DbfNoEntryFoundException"))
       {
-        System.err.println("Unexpected exception when retrieving from "
+        jalview.bin.Console.errPrintln("Unexpected exception when retrieving from "
                 + database + "\nQuery was : '" + ids + "'");
         ex.printStackTrace(System.err);
       }