JAL-1904 parse feature file colours on to alignment sequences

[jalview.git] / src / jalview / ws / jws1 / SeqSearchWSThread.java

diff --git a/src/jalview/ws/jws1/SeqSearchWSThread.java b/src/jalview/ws/jws1/SeqSearchWSThread.java
index a6e3731..a28494c 100644 (file)
--- a/src/jalview/ws/jws1/SeqSearchWSThread.java
+++ b/src/jalview/ws/jws1/SeqSearchWSThread.java
@@ -34,7 +34,9 @@ import jalview.ws.AWsJob;
 import jalview.ws.JobStateSummary;
 import jalview.ws.WSClientI;
 
+import java.util.HashMap;
 import java.util.Hashtable;
+import java.util.Map;
 import java.util.Vector;
 
 import vamsas.objects.simple.MsaResult;
@@ -168,7 +170,7 @@ class SeqSearchWSThread extends JWS1Thread implements WSClientI
      * 
      * @return null or { Alignment(+features and annotation), NewickFile)}
      */
-    public Object[] getAlignment(Alignment dataset, Hashtable featureColours)
+    public Object[] getAlignment(Alignment dataset, Map featureColours)
     {
 
       if (result != null && result.isFinished())
@@ -610,7 +612,7 @@ class SeqSearchWSThread extends JWS1Thread implements WSClientI
     // NewickFile nf[] = new NewickFile[jobs.length];
     for (int j = 0; j < jobs.length; j++)
     {
-      Hashtable featureColours = new Hashtable();
+      Map featureColours = new HashMap();
       Alignment al = null;
       NewickFile nf = null;
       if (jobs[j].hasResults())