JAL-3878 Refactoring SeqAnnotationServiceCalcWorker.

[jalview.git] / src / jalview / ws2 / operations / AlignmentOperation.java

diff --git a/src/jalview/ws2/operations/AlignmentOperation.java b/src/jalview/ws2/operations/AlignmentOperation.java
index 5b2f554..89aeb79 100644 (file)
--- a/src/jalview/ws2/operations/AlignmentOperation.java
+++ b/src/jalview/ws2/operations/AlignmentOperation.java
@@ -110,6 +110,12 @@ public class AlignmentOperation implements Operation
   {
     return true;
   }
+  
+  @Override
+  public boolean isAlignmentAnalysis()
+  {
+    return false;
+  }
 
   @Override
   public boolean canSubmitGaps()
@@ -123,6 +129,18 @@ public class AlignmentOperation implements Operation
   {
     return false;
   }
+  
+  @Override
+  public boolean getFilterNonStandardSymbols()
+  {
+    return true;
+  }
+  
+  @Override
+  public boolean getNeedsAlignedSequences()
+  {
+    return false;
+  }
 
   @Override
   public MenuEntryProviderI getMenuBuilder()