JAL-3878 Fix sequences not being gathered when submitting without gaps.

[jalview.git] / src / jalview / ws2 / operations / AnnotationServiceWorker.java

diff --git a/src/jalview/ws2/operations/AnnotationServiceWorker.java b/src/jalview/ws2/operations/AnnotationServiceWorker.java
index d59fbdf..10fc728 100644 (file)
--- a/src/jalview/ws2/operations/AnnotationServiceWorker.java
+++ b/src/jalview/ws2/operations/AnnotationServiceWorker.java
@@ -243,6 +243,7 @@ public class AnnotationServiceWorker implements PollableAlignCalcWorkerI
           String sqstring = sq.getSequenceAsString(start, end + 1);
           seq = new Sequence(newName, 
               AlignSeq.extractGaps(jalview.util.Comparison.GapChars, sqstring));
+          seqs.add(seq);
           // for annotation need to also record map to sequence start/end
           // position in range
           // then transfer back to original sequence on return.