JAL-3858 persist PAE matrix (only so far) as serialised floats in element on dataset...

[jalview.git] / src / jalview / xml / binding / jalview / Annotation.java

diff --git a/src/jalview/xml/binding/jalview/Annotation.java b/src/jalview/xml/binding/jalview/Annotation.java
index 8c07465..0dd0c99 100644 (file)
--- a/src/jalview/xml/binding/jalview/Annotation.java
+++ b/src/jalview/xml/binding/jalview/Annotation.java
@@ -2,7 +2,7 @@
 // This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 
 // See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a> 
 // Any modifications to this file will be lost upon recompilation of the source schema. 
-// Generated on: 2023.01.31 at 04:07:08 PM GMT 
+// Generated on: 2023.02.22 at 05:27:55 PM GMT 
 //
 
 
@@ -42,6 +42,7 @@ import javax.xml.bind.annotation.XmlType;
  *             &lt;/complexContent>
  *           &lt;/complexType>
  *         &lt;/element>
+ *         &lt;element name="contactmatrix" type="{www.vamsas.ac.uk/jalview/version2}MatrixType" maxOccurs="unbounded" minOccurs="0"/>
  *         &lt;element name="property" maxOccurs="unbounded" minOccurs="0">
  *           &lt;complexType>
  *             &lt;complexContent>
@@ -83,6 +84,7 @@ import javax.xml.bind.annotation.XmlType;
     "label",
     "description",
     "thresholdLine",
+    "contactmatrix",
     "property"
 })
 @XmlRootElement(name = "Annotation")
@@ -93,6 +95,7 @@ public class Annotation {
     protected String label;
     protected String description;
     protected Annotation.ThresholdLine thresholdLine;
+    protected List<MatrixType> contactmatrix;
     protected List<Annotation.Property> property;
     @XmlAttribute(name = "graph", required = true)
     protected boolean graph;
@@ -231,6 +234,35 @@ public class Annotation {
     }
 
     /**
+     * Gets the value of the contactmatrix property.
+     * 
+     * <p>
+     * This accessor method returns a reference to the live list,
+     * not a snapshot. Therefore any modification you make to the
+     * returned list will be present inside the JAXB object.
+     * This is why there is not a <CODE>set</CODE> method for the contactmatrix property.
+     * 
+     * <p>
+     * For example, to add a new item, do as follows:
+     * <pre>
+     *    getContactmatrix().add(newItem);
+     * </pre>
+     * 
+     * 
+     * <p>
+     * Objects of the following type(s) are allowed in the list
+     * {@link MatrixType }
+     * 
+     * 
+     */
+    public List<MatrixType> getContactmatrix() {
+        if (contactmatrix == null) {
+            contactmatrix = new ArrayList<MatrixType>();
+        }
+        return this.contactmatrix;
+    }
+
+    /**
      * Gets the value of the property property.
      * 
      * <p>