JAL-4124 matrix is saved in dataset, with forward references made from alignments

[jalview.git] / src / jalview / xml / binding / jalview / FeatureMatcherSet.java

diff --git a/src/jalview/xml/binding/jalview/FeatureMatcherSet.java b/src/jalview/xml/binding/jalview/FeatureMatcherSet.java
index cb6375a..f182816 100644 (file)
--- a/src/jalview/xml/binding/jalview/FeatureMatcherSet.java
+++ b/src/jalview/xml/binding/jalview/FeatureMatcherSet.java
@@ -1,8 +1,8 @@
 //
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a> 
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3 
+// See https://eclipse-ee4j.github.io/jaxb-ri 
 // Any modifications to this file will be lost upon recompilation of the source schema. 
-// Generated on: 2023.08.28 at 01:52:46 PM BST 
+// Generated on: 2023.09.01 at 02:16:11 PM BST 
 //
 
 
@@ -20,33 +20,33 @@ import javax.xml.bind.annotation.XmlType;
 /**
  * A feature match condition, which may be simple or compound
  * 
- * <p>Java class for FeatureMatcherSet complex type.
+ * &lt;p&gt;Java class for FeatureMatcherSet complex type.
  * 
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * &lt;p&gt;The following schema fragment specifies the expected content contained within this class.
  * 
- * <pre>
- * &lt;complexType name="FeatureMatcherSet">
- *   &lt;complexContent>
- *     &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- *       &lt;choice>
- *         &lt;element name="matchCondition" type="{www.jalview.org/colours}FeatureMatcher"/>
- *         &lt;element name="compoundMatcher">
- *           &lt;complexType>
- *             &lt;complexContent>
- *               &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- *                 &lt;sequence>
- *                   &lt;element name="matcherSet" type="{www.jalview.org/colours}FeatureMatcherSet" maxOccurs="2" minOccurs="2"/>
- *                 &lt;/sequence>
- *                 &lt;attribute name="and" use="required" type="{http://www.w3.org/2001/XMLSchema}boolean" />
- *               &lt;/restriction>
- *             &lt;/complexContent>
- *           &lt;/complexType>
- *         &lt;/element>
- *       &lt;/choice>
- *     &lt;/restriction>
- *   &lt;/complexContent>
- * &lt;/complexType>
- * </pre>
+ * &lt;pre&gt;
+ * &amp;lt;complexType name="FeatureMatcherSet"&amp;gt;
+ *   &amp;lt;complexContent&amp;gt;
+ *     &amp;lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&amp;gt;
+ *       &amp;lt;choice&amp;gt;
+ *         &amp;lt;element name="matchCondition" type="{www.jalview.org/colours}FeatureMatcher"/&amp;gt;
+ *         &amp;lt;element name="compoundMatcher"&amp;gt;
+ *           &amp;lt;complexType&amp;gt;
+ *             &amp;lt;complexContent&amp;gt;
+ *               &amp;lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&amp;gt;
+ *                 &amp;lt;sequence&amp;gt;
+ *                   &amp;lt;element name="matcherSet" type="{www.jalview.org/colours}FeatureMatcherSet" maxOccurs="2" minOccurs="2"/&amp;gt;
+ *                 &amp;lt;/sequence&amp;gt;
+ *                 &amp;lt;attribute name="and" use="required" type="{http://www.w3.org/2001/XMLSchema}boolean" /&amp;gt;
+ *               &amp;lt;/restriction&amp;gt;
+ *             &amp;lt;/complexContent&amp;gt;
+ *           &amp;lt;/complexType&amp;gt;
+ *         &amp;lt;/element&amp;gt;
+ *       &amp;lt;/choice&amp;gt;
+ *     &amp;lt;/restriction&amp;gt;
+ *   &amp;lt;/complexContent&amp;gt;
+ * &amp;lt;/complexType&amp;gt;
+ * &lt;/pre&gt;
  * 
  * 
  */
@@ -112,22 +112,22 @@ public class FeatureMatcherSet {
 
 
     /**
-     * <p>Java class for anonymous complex type.
+     * &lt;p&gt;Java class for anonymous complex type.
      * 
-     * <p>The following schema fragment specifies the expected content contained within this class.
+     * &lt;p&gt;The following schema fragment specifies the expected content contained within this class.
      * 
-     * <pre>
-     * &lt;complexType>
-     *   &lt;complexContent>
-     *     &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
-     *       &lt;sequence>
-     *         &lt;element name="matcherSet" type="{www.jalview.org/colours}FeatureMatcherSet" maxOccurs="2" minOccurs="2"/>
-     *       &lt;/sequence>
-     *       &lt;attribute name="and" use="required" type="{http://www.w3.org/2001/XMLSchema}boolean" />
-     *     &lt;/restriction>
-     *   &lt;/complexContent>
-     * &lt;/complexType>
-     * </pre>
+     * &lt;pre&gt;
+     * &amp;lt;complexType&amp;gt;
+     *   &amp;lt;complexContent&amp;gt;
+     *     &amp;lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&amp;gt;
+     *       &amp;lt;sequence&amp;gt;
+     *         &amp;lt;element name="matcherSet" type="{www.jalview.org/colours}FeatureMatcherSet" maxOccurs="2" minOccurs="2"/&amp;gt;
+     *       &amp;lt;/sequence&amp;gt;
+     *       &amp;lt;attribute name="and" use="required" type="{http://www.w3.org/2001/XMLSchema}boolean" /&amp;gt;
+     *     &amp;lt;/restriction&amp;gt;
+     *   &amp;lt;/complexContent&amp;gt;
+     * &amp;lt;/complexType&amp;gt;
+     * &lt;/pre&gt;
      * 
      * 
      */
@@ -145,20 +145,20 @@ public class FeatureMatcherSet {
         /**
          * Gets the value of the matcherSet property.
          * 
-         * <p>
+         * &lt;p&gt;
          * This accessor method returns a reference to the live list,
          * not a snapshot. Therefore any modification you make to the
          * returned list will be present inside the JAXB object.
-         * This is why there is not a <CODE>set</CODE> method for the matcherSet property.
+         * This is why there is not a &lt;CODE&gt;set&lt;/CODE&gt; method for the matcherSet property.
          * 
-         * <p>
+         * &lt;p&gt;
          * For example, to add a new item, do as follows:
-         * <pre>
+         * &lt;pre&gt;
          *    getMatcherSet().add(newItem);
-         * </pre>
+         * &lt;/pre&gt;
          * 
          * 
-         * <p>
+         * &lt;p&gt;
          * Objects of the following type(s) are allowed in the list
          * {@link FeatureMatcherSet }
          *