Merge branch 'develop' into bug/JAL-4125_flatlaf_quithandler_warning_doesnt_display_p...
[jalview.git] / src / jalview / xml / binding / jalview / JalviewUserColours.java
index be68266..21abacb 100644 (file)
@@ -1,10 +1,11 @@
 //
-// This file was generated by the Eclipse Implementation of JAXB, v2.3.3 
-// See https://eclipse-ee4j.github.io/jaxb-ri 
+// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 
+// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a> 
 // Any modifications to this file will be lost upon recompilation of the source schema. 
-// Generated on: 2021.08.30 at 11:05:22 AM BST 
+// Generated on: 2023.01.31 at 04:07:08 PM GMT 
 //
 
+
 package jalview.xml.binding.jalview;
 
 import java.util.ArrayList;
@@ -15,585 +16,597 @@ import javax.xml.bind.annotation.XmlAttribute;
 import javax.xml.bind.annotation.XmlElement;
 import javax.xml.bind.annotation.XmlType;
 
+
 /**
- * &lt;p&gt;Java class for JalviewUserColours complex type.
+ * <p>Java class for JalviewUserColours complex type.
  * 
- * &lt;p&gt;The following schema fragment specifies the expected content
- * contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
  * 
- * &lt;pre&gt; &amp;lt;complexType name="JalviewUserColours"&amp;gt;
- * &amp;lt;complexContent&amp;gt; &amp;lt;restriction
- * base="{http://www.w3.org/2001/XMLSchema}anyType"&amp;gt;
- * &amp;lt;sequence&amp;gt; &amp;lt;element name="Version"
- * type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/&amp;gt;
- * &amp;lt;element name="colour" maxOccurs="unbounded" minOccurs="0"&amp;gt;
- * &amp;lt;complexType&amp;gt; &amp;lt;complexContent&amp;gt;
- * &amp;lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&amp;gt;
- * &amp;lt;sequence&amp;gt; &amp;lt;element name="attributeName"
- * type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="2"
- * minOccurs="0"/&amp;gt; &amp;lt;/sequence&amp;gt; &amp;lt;attribute
- * name="Name" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
- * &amp;lt;attribute name="RGB" use="required"
- * type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt; &amp;lt;attribute
- * name="minRGB" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
- * &amp;lt;attribute name="noValueColour"
- * type="{www.jalview.org/colours}NoValueColour" default="Min" /&amp;gt;
- * &amp;lt;attribute name="threshType"
- * type="{www.jalview.org/colours}ThresholdType" /&amp;gt; &amp;lt;attribute
- * name="threshold" type="{http://www.w3.org/2001/XMLSchema}float" /&amp;gt;
- * &amp;lt;attribute name="max" type="{http://www.w3.org/2001/XMLSchema}float"
- * /&amp;gt; &amp;lt;attribute name="min"
- * type="{http://www.w3.org/2001/XMLSchema}float" /&amp;gt; &amp;lt;attribute
- * name="colourByLabel" type="{http://www.w3.org/2001/XMLSchema}boolean"
- * /&amp;gt; &amp;lt;attribute name="autoScale"
- * type="{http://www.w3.org/2001/XMLSchema}boolean" /&amp;gt;
- * &amp;lt;/restriction&amp;gt; &amp;lt;/complexContent&amp;gt;
- * &amp;lt;/complexType&amp;gt; &amp;lt;/element&amp;gt; &amp;lt;element
- * name="filter" maxOccurs="unbounded" minOccurs="0"&amp;gt;
- * &amp;lt;complexType&amp;gt; &amp;lt;complexContent&amp;gt;
- * &amp;lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&amp;gt;
- * &amp;lt;sequence&amp;gt; &amp;lt;element name="matcherSet"
- * type="{www.jalview.org/colours}FeatureMatcherSet"/&amp;gt;
- * &amp;lt;/sequence&amp;gt; &amp;lt;attribute name="featureType" use="required"
- * type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
- * &amp;lt;/restriction&amp;gt; &amp;lt;/complexContent&amp;gt;
- * &amp;lt;/complexType&amp;gt; &amp;lt;/element&amp;gt;
- * &amp;lt;/sequence&amp;gt; &amp;lt;attribute name="schemeName"
- * type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
- * &amp;lt;/restriction&amp;gt; &amp;lt;/complexContent&amp;gt;
- * &amp;lt;/complexType&amp;gt; &lt;/pre&gt;
+ * <pre>
+ * &lt;complexType name="JalviewUserColours">
+ *   &lt;complexContent>
+ *     &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ *       &lt;sequence>
+ *         &lt;element name="Version" type="{http://www.w3.org/2001/XMLSchema}string" minOccurs="0"/>
+ *         &lt;element name="colour" maxOccurs="unbounded" minOccurs="0">
+ *           &lt;complexType>
+ *             &lt;complexContent>
+ *               &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ *                 &lt;sequence>
+ *                   &lt;element name="attributeName" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="2" minOccurs="0"/>
+ *                 &lt;/sequence>
+ *                 &lt;attribute name="Name" type="{http://www.w3.org/2001/XMLSchema}string" />
+ *                 &lt;attribute name="RGB" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ *                 &lt;attribute name="minRGB" type="{http://www.w3.org/2001/XMLSchema}string" />
+ *                 &lt;attribute name="noValueColour" type="{www.jalview.org/colours}NoValueColour" default="Min" />
+ *                 &lt;attribute name="threshType" type="{www.jalview.org/colours}ThresholdType" />
+ *                 &lt;attribute name="threshold" type="{http://www.w3.org/2001/XMLSchema}float" />
+ *                 &lt;attribute name="max" type="{http://www.w3.org/2001/XMLSchema}float" />
+ *                 &lt;attribute name="min" type="{http://www.w3.org/2001/XMLSchema}float" />
+ *                 &lt;attribute name="colourByLabel" type="{http://www.w3.org/2001/XMLSchema}boolean" />
+ *                 &lt;attribute name="autoScale" type="{http://www.w3.org/2001/XMLSchema}boolean" />
+ *               &lt;/restriction>
+ *             &lt;/complexContent>
+ *           &lt;/complexType>
+ *         &lt;/element>
+ *         &lt;element name="filter" maxOccurs="unbounded" minOccurs="0">
+ *           &lt;complexType>
+ *             &lt;complexContent>
+ *               &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ *                 &lt;sequence>
+ *                   &lt;element name="matcherSet" type="{www.jalview.org/colours}FeatureMatcherSet"/>
+ *                 &lt;/sequence>
+ *                 &lt;attribute name="featureType" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ *               &lt;/restriction>
+ *             &lt;/complexContent>
+ *           &lt;/complexType>
+ *         &lt;/element>
+ *       &lt;/sequence>
+ *       &lt;attribute name="schemeName" type="{http://www.w3.org/2001/XMLSchema}string" />
+ *     &lt;/restriction>
+ *   &lt;/complexContent>
+ * &lt;/complexType>
+ * </pre>
  * 
  * 
  */
 @XmlAccessorType(XmlAccessType.FIELD)
-@XmlType(
-  name = "JalviewUserColours",
-  namespace = "www.jalview.org/colours",
-  propOrder =
-  { "version", "colour", "filter" })
-public class JalviewUserColours
-{
-
-  @XmlElement(name = "Version", namespace = "")
-  protected String version;
-
-  @XmlElement(namespace = "")
-  protected List<JalviewUserColours.Colour> colour;
-
-  @XmlElement(namespace = "")
-  protected List<JalviewUserColours.Filter> filter;
-
-  @XmlAttribute(name = "schemeName")
-  protected String schemeName;
-
-  /**
-   * Gets the value of the version property.
-   * 
-   * @return possible object is {@link String }
-   * 
-   */
-  public String getVersion()
-  {
-    return version;
-  }
-
-  /**
-   * Sets the value of the version property.
-   * 
-   * @param value
-   *          allowed object is {@link String }
-   * 
-   */
-  public void setVersion(String value)
-  {
-    this.version = value;
-  }
-
-  /**
-   * Gets the value of the colour property.
-   * 
-   * &lt;p&gt; This accessor method returns a reference to the live list, not a
-   * snapshot. Therefore any modification you make to the returned list will be
-   * present inside the JAXB object. This is why there is not a
-   * &lt;CODE&gt;set&lt;/CODE&gt; method for the colour property.
-   * 
-   * &lt;p&gt; For example, to add a new item, do as follows: &lt;pre&gt;
-   * getColour().add(newItem); &lt;/pre&gt;
-   * 
-   * 
-   * &lt;p&gt; Objects of the following type(s) are allowed in the list
-   * {@link JalviewUserColours.Colour }
-   * 
-   * 
-   */
-  public List<JalviewUserColours.Colour> getColour()
-  {
-    if (colour == null)
-    {
-      colour = new ArrayList<JalviewUserColours.Colour>();
-    }
-    return this.colour;
-  }
-
-  /**
-   * Gets the value of the filter property.
-   * 
-   * &lt;p&gt; This accessor method returns a reference to the live list, not a
-   * snapshot. Therefore any modification you make to the returned list will be
-   * present inside the JAXB object. This is why there is not a
-   * &lt;CODE&gt;set&lt;/CODE&gt; method for the filter property.
-   * 
-   * &lt;p&gt; For example, to add a new item, do as follows: &lt;pre&gt;
-   * getFilter().add(newItem); &lt;/pre&gt;
-   * 
-   * 
-   * &lt;p&gt; Objects of the following type(s) are allowed in the list
-   * {@link JalviewUserColours.Filter }
-   * 
-   * 
-   */
-  public List<JalviewUserColours.Filter> getFilter()
-  {
-    if (filter == null)
-    {
-      filter = new ArrayList<JalviewUserColours.Filter>();
-    }
-    return this.filter;
-  }
-
-  /**
-   * Gets the value of the schemeName property.
-   * 
-   * @return possible object is {@link String }
-   * 
-   */
-  public String getSchemeName()
-  {
-    return schemeName;
-  }
-
-  /**
-   * Sets the value of the schemeName property.
-   * 
-   * @param value
-   *          allowed object is {@link String }
-   * 
-   */
-  public void setSchemeName(String value)
-  {
-    this.schemeName = value;
-  }
-
-  /**
-   * &lt;p&gt;Java class for anonymous complex type.
-   * 
-   * &lt;p&gt;The following schema fragment specifies the expected content
-   * contained within this class.
-   * 
-   * &lt;pre&gt; &amp;lt;complexType&amp;gt; &amp;lt;complexContent&amp;gt;
-   * &amp;lt;restriction
-   * base="{http://www.w3.org/2001/XMLSchema}anyType"&amp;gt;
-   * &amp;lt;sequence&amp;gt; &amp;lt;element name="attributeName"
-   * type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="2"
-   * minOccurs="0"/&amp;gt; &amp;lt;/sequence&amp;gt; &amp;lt;attribute
-   * name="Name" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
-   * &amp;lt;attribute name="RGB" use="required"
-   * type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt; &amp;lt;attribute
-   * name="minRGB" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
-   * &amp;lt;attribute name="noValueColour"
-   * type="{www.jalview.org/colours}NoValueColour" default="Min" /&amp;gt;
-   * &amp;lt;attribute name="threshType"
-   * type="{www.jalview.org/colours}ThresholdType" /&amp;gt; &amp;lt;attribute
-   * name="threshold" type="{http://www.w3.org/2001/XMLSchema}float" /&amp;gt;
-   * &amp;lt;attribute name="max" type="{http://www.w3.org/2001/XMLSchema}float"
-   * /&amp;gt; &amp;lt;attribute name="min"
-   * type="{http://www.w3.org/2001/XMLSchema}float" /&amp;gt; &amp;lt;attribute
-   * name="colourByLabel" type="{http://www.w3.org/2001/XMLSchema}boolean"
-   * /&amp;gt; &amp;lt;attribute name="autoScale"
-   * type="{http://www.w3.org/2001/XMLSchema}boolean" /&amp;gt;
-   * &amp;lt;/restriction&amp;gt; &amp;lt;/complexContent&amp;gt;
-   * &amp;lt;/complexType&amp;gt; &lt;/pre&gt;
-   * 
-   * 
-   */
-  @XmlAccessorType(XmlAccessType.FIELD)
-  @XmlType(name = "", propOrder = { "attributeName" })
-  public static class Colour
-  {
-
+@XmlType(name = "JalviewUserColours", namespace = "www.jalview.org/colours", propOrder = {
+    "version",
+    "colour",
+    "filter"
+})
+public class JalviewUserColours {
+
+    @XmlElement(name = "Version", namespace = "")
+    protected String version;
     @XmlElement(namespace = "")
-    protected List<String> attributeName;
-
-    @XmlAttribute(name = "Name")
-    protected String name;
-
-    @XmlAttribute(name = "RGB", required = true)
-    protected String rgb;
-
-    @XmlAttribute(name = "minRGB")
-    protected String minRGB;
-
-    @XmlAttribute(name = "noValueColour")
-    protected NoValueColour noValueColour;
-
-    @XmlAttribute(name = "threshType")
-    protected ThresholdType threshType;
-
-    @XmlAttribute(name = "threshold")
-    protected Float threshold;
-
-    @XmlAttribute(name = "max")
-    protected Float max;
-
-    @XmlAttribute(name = "min")
-    protected Float min;
-
-    @XmlAttribute(name = "colourByLabel")
-    protected Boolean colourByLabel;
-
-    @XmlAttribute(name = "autoScale")
-    protected Boolean autoScale;
-
-    /**
-     * Gets the value of the attributeName property.
-     * 
-     * &lt;p&gt; This accessor method returns a reference to the live list, not
-     * a snapshot. Therefore any modification you make to the returned list will
-     * be present inside the JAXB object. This is why there is not a
-     * &lt;CODE&gt;set&lt;/CODE&gt; method for the attributeName property.
-     * 
-     * &lt;p&gt; For example, to add a new item, do as follows: &lt;pre&gt;
-     * getAttributeName().add(newItem); &lt;/pre&gt;
-     * 
-     * 
-     * &lt;p&gt; Objects of the following type(s) are allowed in the list
-     * {@link String }
-     * 
-     * 
-     */
-    public List<String> getAttributeName()
-    {
-      if (attributeName == null)
-      {
-        attributeName = new ArrayList<String>();
-      }
-      return this.attributeName;
-    }
-
-    /**
-     * Gets the value of the name property.
-     * 
-     * @return possible object is {@link String }
-     * 
-     */
-    public String getName()
-    {
-      return name;
-    }
-
-    /**
-     * Sets the value of the name property.
-     * 
-     * @param value
-     *          allowed object is {@link String }
-     * 
-     */
-    public void setName(String value)
-    {
-      this.name = value;
-    }
-
-    /**
-     * Gets the value of the rgb property.
-     * 
-     * @return possible object is {@link String }
-     * 
-     */
-    public String getRGB()
-    {
-      return rgb;
-    }
-
-    /**
-     * Sets the value of the rgb property.
-     * 
-     * @param value
-     *          allowed object is {@link String }
-     * 
-     */
-    public void setRGB(String value)
-    {
-      this.rgb = value;
-    }
-
-    /**
-     * Gets the value of the minRGB property.
-     * 
-     * @return possible object is {@link String }
-     * 
-     */
-    public String getMinRGB()
-    {
-      return minRGB;
-    }
-
-    /**
-     * Sets the value of the minRGB property.
-     * 
-     * @param value
-     *          allowed object is {@link String }
-     * 
-     */
-    public void setMinRGB(String value)
-    {
-      this.minRGB = value;
-    }
+    protected List<JalviewUserColours.Colour> colour;
+    @XmlElement(namespace = "")
+    protected List<JalviewUserColours.Filter> filter;
+    @XmlAttribute(name = "schemeName")
+    protected String schemeName;
 
     /**
-     * Gets the value of the noValueColour property.
-     * 
-     * @return possible object is {@link NoValueColour }
+     * Gets the value of the version property.
      * 
+     * @return
+     *     possible object is
+     *     {@link String }
+     *     
      */
-    public NoValueColour getNoValueColour()
-    {
-      if (noValueColour == null)
-      {
-        return NoValueColour.MIN;
-      }
-      else
-      {
-        return noValueColour;
-      }
+    public String getVersion() {
+        return version;
     }
 
     /**
-     * Sets the value of the noValueColour property.
+     * Sets the value of the version property.
      * 
      * @param value
-     *          allowed object is {@link NoValueColour }
-     * 
+     *     allowed object is
+     *     {@link String }
+     *     
      */
-    public void setNoValueColour(NoValueColour value)
-    {
-      this.noValueColour = value;
+    public void setVersion(String value) {
+        this.version = value;
     }
 
     /**
-     * Gets the value of the threshType property.
+     * Gets the value of the colour property.
      * 
-     * @return possible object is {@link ThresholdType }
+     * <p>
+     * This accessor method returns a reference to the live list,
+     * not a snapshot. Therefore any modification you make to the
+     * returned list will be present inside the JAXB object.
+     * This is why there is not a <CODE>set</CODE> method for the colour property.
      * 
-     */
-    public ThresholdType getThreshType()
-    {
-      return threshType;
-    }
-
-    /**
-     * Sets the value of the threshType property.
+     * <p>
+     * For example, to add a new item, do as follows:
+     * <pre>
+     *    getColour().add(newItem);
+     * </pre>
      * 
-     * @param value
-     *          allowed object is {@link ThresholdType }
      * 
-     */
-    public void setThreshType(ThresholdType value)
-    {
-      this.threshType = value;
-    }
-
-    /**
-     * Gets the value of the threshold property.
+     * <p>
+     * Objects of the following type(s) are allowed in the list
+     * {@link JalviewUserColours.Colour }
      * 
-     * @return possible object is {@link Float }
      * 
      */
-    public Float getThreshold()
-    {
-      return threshold;
+    public List<JalviewUserColours.Colour> getColour() {
+        if (colour == null) {
+            colour = new ArrayList<JalviewUserColours.Colour>();
+        }
+        return this.colour;
     }
 
     /**
-     * Sets the value of the threshold property.
+     * Gets the value of the filter property.
      * 
-     * @param value
-     *          allowed object is {@link Float }
+     * <p>
+     * This accessor method returns a reference to the live list,
+     * not a snapshot. Therefore any modification you make to the
+     * returned list will be present inside the JAXB object.
+     * This is why there is not a <CODE>set</CODE> method for the filter property.
      * 
-     */
-    public void setThreshold(Float value)
-    {
-      this.threshold = value;
-    }
-
-    /**
-     * Gets the value of the max property.
+     * <p>
+     * For example, to add a new item, do as follows:
+     * <pre>
+     *    getFilter().add(newItem);
+     * </pre>
      * 
-     * @return possible object is {@link Float }
      * 
-     */
-    public Float getMax()
-    {
-      return max;
-    }
-
-    /**
-     * Sets the value of the max property.
+     * <p>
+     * Objects of the following type(s) are allowed in the list
+     * {@link JalviewUserColours.Filter }
      * 
-     * @param value
-     *          allowed object is {@link Float }
      * 
      */
-    public void setMax(Float value)
-    {
-      this.max = value;
+    public List<JalviewUserColours.Filter> getFilter() {
+        if (filter == null) {
+            filter = new ArrayList<JalviewUserColours.Filter>();
+        }
+        return this.filter;
     }
 
     /**
-     * Gets the value of the min property.
-     * 
-     * @return possible object is {@link Float }
+     * Gets the value of the schemeName property.
      * 
+     * @return
+     *     possible object is
+     *     {@link String }
+     *     
      */
-    public Float getMin()
-    {
-      return min;
+    public String getSchemeName() {
+        return schemeName;
     }
 
     /**
-     * Sets the value of the min property.
+     * Sets the value of the schemeName property.
      * 
      * @param value
-     *          allowed object is {@link Float }
-     * 
-     */
-    public void setMin(Float value)
-    {
-      this.min = value;
-    }
-
-    /**
-     * Gets the value of the colourByLabel property.
-     * 
-     * @return possible object is {@link Boolean }
-     * 
+     *     allowed object is
+     *     {@link String }
+     *     
      */
-    public Boolean isColourByLabel()
-    {
-      return colourByLabel;
+    public void setSchemeName(String value) {
+        this.schemeName = value;
     }
 
-    /**
-     * Sets the value of the colourByLabel property.
-     * 
-     * @param value
-     *          allowed object is {@link Boolean }
-     * 
-     */
-    public void setColourByLabel(Boolean value)
-    {
-      this.colourByLabel = value;
-    }
 
     /**
-     * Gets the value of the autoScale property.
+     * <p>Java class for anonymous complex type.
+     * 
+     * <p>The following schema fragment specifies the expected content contained within this class.
+     * 
+     * <pre>
+     * &lt;complexType>
+     *   &lt;complexContent>
+     *     &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+     *       &lt;sequence>
+     *         &lt;element name="attributeName" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="2" minOccurs="0"/>
+     *       &lt;/sequence>
+     *       &lt;attribute name="Name" type="{http://www.w3.org/2001/XMLSchema}string" />
+     *       &lt;attribute name="RGB" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+     *       &lt;attribute name="minRGB" type="{http://www.w3.org/2001/XMLSchema}string" />
+     *       &lt;attribute name="noValueColour" type="{www.jalview.org/colours}NoValueColour" default="Min" />
+     *       &lt;attribute name="threshType" type="{www.jalview.org/colours}ThresholdType" />
+     *       &lt;attribute name="threshold" type="{http://www.w3.org/2001/XMLSchema}float" />
+     *       &lt;attribute name="max" type="{http://www.w3.org/2001/XMLSchema}float" />
+     *       &lt;attribute name="min" type="{http://www.w3.org/2001/XMLSchema}float" />
+     *       &lt;attribute name="colourByLabel" type="{http://www.w3.org/2001/XMLSchema}boolean" />
+     *       &lt;attribute name="autoScale" type="{http://www.w3.org/2001/XMLSchema}boolean" />
+     *     &lt;/restriction>
+     *   &lt;/complexContent>
+     * &lt;/complexType>
+     * </pre>
      * 
-     * @return possible object is {@link Boolean }
      * 
      */
-    public Boolean isAutoScale()
-    {
-      return autoScale;
-    }
+    @XmlAccessorType(XmlAccessType.FIELD)
+    @XmlType(name = "", propOrder = {
+        "attributeName"
+    })
+    public static class Colour {
+
+        @XmlElement(namespace = "")
+        protected List<String> attributeName;
+        @XmlAttribute(name = "Name")
+        protected String name;
+        @XmlAttribute(name = "RGB", required = true)
+        protected String rgb;
+        @XmlAttribute(name = "minRGB")
+        protected String minRGB;
+        @XmlAttribute(name = "noValueColour")
+        protected NoValueColour noValueColour;
+        @XmlAttribute(name = "threshType")
+        protected ThresholdType threshType;
+        @XmlAttribute(name = "threshold")
+        protected Float threshold;
+        @XmlAttribute(name = "max")
+        protected Float max;
+        @XmlAttribute(name = "min")
+        protected Float min;
+        @XmlAttribute(name = "colourByLabel")
+        protected Boolean colourByLabel;
+        @XmlAttribute(name = "autoScale")
+        protected Boolean autoScale;
+
+        /**
+         * Gets the value of the attributeName property.
+         * 
+         * <p>
+         * This accessor method returns a reference to the live list,
+         * not a snapshot. Therefore any modification you make to the
+         * returned list will be present inside the JAXB object.
+         * This is why there is not a <CODE>set</CODE> method for the attributeName property.
+         * 
+         * <p>
+         * For example, to add a new item, do as follows:
+         * <pre>
+         *    getAttributeName().add(newItem);
+         * </pre>
+         * 
+         * 
+         * <p>
+         * Objects of the following type(s) are allowed in the list
+         * {@link String }
+         * 
+         * 
+         */
+        public List<String> getAttributeName() {
+            if (attributeName == null) {
+                attributeName = new ArrayList<String>();
+            }
+            return this.attributeName;
+        }
+
+        /**
+         * Gets the value of the name property.
+         * 
+         * @return
+         *     possible object is
+         *     {@link String }
+         *     
+         */
+        public String getName() {
+            return name;
+        }
+
+        /**
+         * Sets the value of the name property.
+         * 
+         * @param value
+         *     allowed object is
+         *     {@link String }
+         *     
+         */
+        public void setName(String value) {
+            this.name = value;
+        }
+
+        /**
+         * Gets the value of the rgb property.
+         * 
+         * @return
+         *     possible object is
+         *     {@link String }
+         *     
+         */
+        public String getRGB() {
+            return rgb;
+        }
+
+        /**
+         * Sets the value of the rgb property.
+         * 
+         * @param value
+         *     allowed object is
+         *     {@link String }
+         *     
+         */
+        public void setRGB(String value) {
+            this.rgb = value;
+        }
+
+        /**
+         * Gets the value of the minRGB property.
+         * 
+         * @return
+         *     possible object is
+         *     {@link String }
+         *     
+         */
+        public String getMinRGB() {
+            return minRGB;
+        }
+
+        /**
+         * Sets the value of the minRGB property.
+         * 
+         * @param value
+         *     allowed object is
+         *     {@link String }
+         *     
+         */
+        public void setMinRGB(String value) {
+            this.minRGB = value;
+        }
+
+        /**
+         * Gets the value of the noValueColour property.
+         * 
+         * @return
+         *     possible object is
+         *     {@link NoValueColour }
+         *     
+         */
+        public NoValueColour getNoValueColour() {
+            if (noValueColour == null) {
+                return NoValueColour.MIN;
+            } else {
+                return noValueColour;
+            }
+        }
+
+        /**
+         * Sets the value of the noValueColour property.
+         * 
+         * @param value
+         *     allowed object is
+         *     {@link NoValueColour }
+         *     
+         */
+        public void setNoValueColour(NoValueColour value) {
+            this.noValueColour = value;
+        }
+
+        /**
+         * Gets the value of the threshType property.
+         * 
+         * @return
+         *     possible object is
+         *     {@link ThresholdType }
+         *     
+         */
+        public ThresholdType getThreshType() {
+            return threshType;
+        }
+
+        /**
+         * Sets the value of the threshType property.
+         * 
+         * @param value
+         *     allowed object is
+         *     {@link ThresholdType }
+         *     
+         */
+        public void setThreshType(ThresholdType value) {
+            this.threshType = value;
+        }
+
+        /**
+         * Gets the value of the threshold property.
+         * 
+         * @return
+         *     possible object is
+         *     {@link Float }
+         *     
+         */
+        public Float getThreshold() {
+            return threshold;
+        }
+
+        /**
+         * Sets the value of the threshold property.
+         * 
+         * @param value
+         *     allowed object is
+         *     {@link Float }
+         *     
+         */
+        public void setThreshold(Float value) {
+            this.threshold = value;
+        }
+
+        /**
+         * Gets the value of the max property.
+         * 
+         * @return
+         *     possible object is
+         *     {@link Float }
+         *     
+         */
+        public Float getMax() {
+            return max;
+        }
+
+        /**
+         * Sets the value of the max property.
+         * 
+         * @param value
+         *     allowed object is
+         *     {@link Float }
+         *     
+         */
+        public void setMax(Float value) {
+            this.max = value;
+        }
+
+        /**
+         * Gets the value of the min property.
+         * 
+         * @return
+         *     possible object is
+         *     {@link Float }
+         *     
+         */
+        public Float getMin() {
+            return min;
+        }
+
+        /**
+         * Sets the value of the min property.
+         * 
+         * @param value
+         *     allowed object is
+         *     {@link Float }
+         *     
+         */
+        public void setMin(Float value) {
+            this.min = value;
+        }
+
+        /**
+         * Gets the value of the colourByLabel property.
+         * 
+         * @return
+         *     possible object is
+         *     {@link Boolean }
+         *     
+         */
+        public Boolean isColourByLabel() {
+            return colourByLabel;
+        }
+
+        /**
+         * Sets the value of the colourByLabel property.
+         * 
+         * @param value
+         *     allowed object is
+         *     {@link Boolean }
+         *     
+         */
+        public void setColourByLabel(Boolean value) {
+            this.colourByLabel = value;
+        }
+
+        /**
+         * Gets the value of the autoScale property.
+         * 
+         * @return
+         *     possible object is
+         *     {@link Boolean }
+         *     
+         */
+        public Boolean isAutoScale() {
+            return autoScale;
+        }
+
+        /**
+         * Sets the value of the autoScale property.
+         * 
+         * @param value
+         *     allowed object is
+         *     {@link Boolean }
+         *     
+         */
+        public void setAutoScale(Boolean value) {
+            this.autoScale = value;
+        }
 
-    /**
-     * Sets the value of the autoScale property.
-     * 
-     * @param value
-     *          allowed object is {@link Boolean }
-     * 
-     */
-    public void setAutoScale(Boolean value)
-    {
-      this.autoScale = value;
     }
 
-  }
-
-  /**
-   * &lt;p&gt;Java class for anonymous complex type.
-   * 
-   * &lt;p&gt;The following schema fragment specifies the expected content
-   * contained within this class.
-   * 
-   * &lt;pre&gt; &amp;lt;complexType&amp;gt; &amp;lt;complexContent&amp;gt;
-   * &amp;lt;restriction
-   * base="{http://www.w3.org/2001/XMLSchema}anyType"&amp;gt;
-   * &amp;lt;sequence&amp;gt; &amp;lt;element name="matcherSet"
-   * type="{www.jalview.org/colours}FeatureMatcherSet"/&amp;gt;
-   * &amp;lt;/sequence&amp;gt; &amp;lt;attribute name="featureType"
-   * use="required" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
-   * &amp;lt;/restriction&amp;gt; &amp;lt;/complexContent&amp;gt;
-   * &amp;lt;/complexType&amp;gt; &lt;/pre&gt;
-   * 
-   * 
-   */
-  @XmlAccessorType(XmlAccessType.FIELD)
-  @XmlType(name = "", propOrder = { "matcherSet" })
-  public static class Filter
-  {
-
-    @XmlElement(namespace = "", required = true)
-    protected FeatureMatcherSet matcherSet;
-
-    @XmlAttribute(name = "featureType", required = true)
-    protected String featureType;
 
     /**
-     * Gets the value of the matcherSet property.
+     * <p>Java class for anonymous complex type.
      * 
-     * @return possible object is {@link FeatureMatcherSet }
+     * <p>The following schema fragment specifies the expected content contained within this class.
      * 
-     */
-    public FeatureMatcherSet getMatcherSet()
-    {
-      return matcherSet;
-    }
-
-    /**
-     * Sets the value of the matcherSet property.
+     * <pre>
+     * &lt;complexType>
+     *   &lt;complexContent>
+     *     &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+     *       &lt;sequence>
+     *         &lt;element name="matcherSet" type="{www.jalview.org/colours}FeatureMatcherSet"/>
+     *       &lt;/sequence>
+     *       &lt;attribute name="featureType" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+     *     &lt;/restriction>
+     *   &lt;/complexContent>
+     * &lt;/complexType>
+     * </pre>
      * 
-     * @param value
-     *          allowed object is {@link FeatureMatcherSet }
      * 
      */
-    public void setMatcherSet(FeatureMatcherSet value)
-    {
-      this.matcherSet = value;
-    }
+    @XmlAccessorType(XmlAccessType.FIELD)
+    @XmlType(name = "", propOrder = {
+        "matcherSet"
+    })
+    public static class Filter {
+
+        @XmlElement(namespace = "", required = true)
+        protected FeatureMatcherSet matcherSet;
+        @XmlAttribute(name = "featureType", required = true)
+        protected String featureType;
+
+        /**
+         * Gets the value of the matcherSet property.
+         * 
+         * @return
+         *     possible object is
+         *     {@link FeatureMatcherSet }
+         *     
+         */
+        public FeatureMatcherSet getMatcherSet() {
+            return matcherSet;
+        }
+
+        /**
+         * Sets the value of the matcherSet property.
+         * 
+         * @param value
+         *     allowed object is
+         *     {@link FeatureMatcherSet }
+         *     
+         */
+        public void setMatcherSet(FeatureMatcherSet value) {
+            this.matcherSet = value;
+        }
+
+        /**
+         * Gets the value of the featureType property.
+         * 
+         * @return
+         *     possible object is
+         *     {@link String }
+         *     
+         */
+        public String getFeatureType() {
+            return featureType;
+        }
+
+        /**
+         * Sets the value of the featureType property.
+         * 
+         * @param value
+         *     allowed object is
+         *     {@link String }
+         *     
+         */
+        public void setFeatureType(String value) {
+            this.featureType = value;
+        }
 
-    /**
-     * Gets the value of the featureType property.
-     * 
-     * @return possible object is {@link String }
-     * 
-     */
-    public String getFeatureType()
-    {
-      return featureType;
     }
 
-    /**
-     * Sets the value of the featureType property.
-     * 
-     * @param value
-     *          allowed object is {@link String }
-     * 
-     */
-    public void setFeatureType(String value)
-    {
-      this.featureType = value;
-    }
-
-  }
-
 }