git://source.jalview.org / jalview.git / blobdiff
? search:
summary | shortlog | log | commit | commitdiff | tree
raw | inline | side by side
JAL-3863 add canonical DBRefEntry flag to Jalview project
[jalview.git] / src / jalview / xml / binding / jalview / Sequence.java
diff --git a/src/jalview/xml/binding/jalview/Sequence.java b/src/jalview/xml/binding/jalview/Sequence.java
index b842947..5381c32 100644 (file)
--- a/src/jalview/xml/binding/jalview/Sequence.java
+++ b/src/jalview/xml/binding/jalview/Sequence.java
@@ -1,8 +1,8 @@
 //
-// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 
-// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a> 
+// This file was generated by the Eclipse Implementation of JAXB, v2.3.3 
+// See https://eclipse-ee4j.github.io/jaxb-ri 
 // Any modifications to this file will be lost upon recompilation of the source schema. 
-// Generated on: 2019.06.07 at 02:21:15 PM BST 
+// Generated on: 2021.08.30 at 11:05:22 AM BST 
 //
 
 
@@ -19,37 +19,38 @@ import javax.xml.bind.annotation.XmlType;
 
 
 /**
- * <p>Java class for anonymous complex type.
+ * &lt;p&gt;Java class for anonymous complex type.
  * 
- * <p>The following schema fragment specifies the expected content contained within this class.
+ * &lt;p&gt;The following schema fragment specifies the expected content contained within this class.
  * 
- * <pre>
- * &lt;complexType>
- *   &lt;complexContent>
- *     &lt;extension base="{www.vamsas.ac.uk/jalview/version2}SequenceType">
- *       &lt;sequence>
- *         &lt;element name="DBRef" maxOccurs="unbounded" minOccurs="0">
- *           &lt;complexType>
- *             &lt;complexContent>
- *               &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
- *                 &lt;sequence>
- *                   &lt;element ref="{www.vamsas.ac.uk/jalview/version2}Mapping" minOccurs="0"/>
- *                 &lt;/sequence>
- *                 &lt;attribute name="source" type="{http://www.w3.org/2001/XMLSchema}string" />
- *                 &lt;attribute name="version" type="{http://www.w3.org/2001/XMLSchema}string" />
- *                 &lt;attribute name="accessionId" type="{http://www.w3.org/2001/XMLSchema}string" />
- *                 &lt;attribute name="locus" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
- *               &lt;/restriction>
- *             &lt;/complexContent>
- *           &lt;/complexType>
- *         &lt;/element>
- *       &lt;/sequence>
- *       &lt;attribute name="dsseqid" type="{http://www.w3.org/2001/XMLSchema}string" />
- *       &lt;attribute name="biotype" type="{http://www.w3.org/2001/XMLSchema}string" />
- *     &lt;/extension>
- *   &lt;/complexContent>
- * &lt;/complexType>
- * </pre>
+ * &lt;pre&gt;
+ * &amp;lt;complexType&amp;gt;
+ *   &amp;lt;complexContent&amp;gt;
+ *     &amp;lt;extension base="{www.vamsas.ac.uk/jalview/version2}SequenceType"&amp;gt;
+ *       &amp;lt;sequence&amp;gt;
+ *         &amp;lt;element name="DBRef" maxOccurs="unbounded" minOccurs="0"&amp;gt;
+ *           &amp;lt;complexType&amp;gt;
+ *             &amp;lt;complexContent&amp;gt;
+ *               &amp;lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&amp;gt;
+ *                 &amp;lt;sequence&amp;gt;
+ *                   &amp;lt;element ref="{www.vamsas.ac.uk/jalview/version2}Mapping" minOccurs="0"/&amp;gt;
+ *                 &amp;lt;/sequence&amp;gt;
+ *                 &amp;lt;attribute name="source" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
+ *                 &amp;lt;attribute name="version" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
+ *                 &amp;lt;attribute name="accessionId" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
+ *                 &amp;lt;attribute name="locus" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" /&amp;gt;
+ *                 &amp;lt;attribute name="canonical" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" /&amp;gt;
+ *               &amp;lt;/restriction&amp;gt;
+ *             &amp;lt;/complexContent&amp;gt;
+ *           &amp;lt;/complexType&amp;gt;
+ *         &amp;lt;/element&amp;gt;
+ *       &amp;lt;/sequence&amp;gt;
+ *       &amp;lt;attribute name="dsseqid" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
+ *       &amp;lt;attribute name="biotype" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
+ *     &amp;lt;/extension&amp;gt;
+ *   &amp;lt;/complexContent&amp;gt;
+ * &amp;lt;/complexType&amp;gt;
+ * &lt;/pre&gt;
  * 
  * 
  */
@@ -72,20 +73,20 @@ public class Sequence
     /**
      * Gets the value of the dbRef property.
      * 
-     * <p>
+     * &lt;p&gt;
      * This accessor method returns a reference to the live list,
      * not a snapshot. Therefore any modification you make to the
      * returned list will be present inside the JAXB object.
-     * This is why there is not a <CODE>set</CODE> method for the dbRef property.
+     * This is why there is not a &lt;CODE&gt;set&lt;/CODE&gt; method for the dbRef property.
      * 
-     * <p>
+     * &lt;p&gt;
      * For example, to add a new item, do as follows:
-     * <pre>
+     * &lt;pre&gt;
      *    getDBRef().add(newItem);
-     * </pre>
+     * &lt;/pre&gt;
      * 
      * 
-     * <p>
+     * &lt;p&gt;
      * Objects of the following type(s) are allowed in the list
      * {@link Sequence.DBRef }
      * 
@@ -148,25 +149,26 @@ public class Sequence
 
 
     /**
-     * <p>Java class for anonymous complex type.
+     * &lt;p&gt;Java class for anonymous complex type.
      * 
-     * <p>The following schema fragment specifies the expected content contained within this class.
+     * &lt;p&gt;The following schema fragment specifies the expected content contained within this class.
      * 
-     * <pre>
-     * &lt;complexType>
-     *   &lt;complexContent>
-     *     &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
-     *       &lt;sequence>
-     *         &lt;element ref="{www.vamsas.ac.uk/jalview/version2}Mapping" minOccurs="0"/>
-     *       &lt;/sequence>
-     *       &lt;attribute name="source" type="{http://www.w3.org/2001/XMLSchema}string" />
-     *       &lt;attribute name="version" type="{http://www.w3.org/2001/XMLSchema}string" />
-     *       &lt;attribute name="accessionId" type="{http://www.w3.org/2001/XMLSchema}string" />
-     *       &lt;attribute name="locus" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" />
-     *     &lt;/restriction>
-     *   &lt;/complexContent>
-     * &lt;/complexType>
-     * </pre>
+     * &lt;pre&gt;
+     * &amp;lt;complexType&amp;gt;
+     *   &amp;lt;complexContent&amp;gt;
+     *     &amp;lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType"&amp;gt;
+     *       &amp;lt;sequence&amp;gt;
+     *         &amp;lt;element ref="{www.vamsas.ac.uk/jalview/version2}Mapping" minOccurs="0"/&amp;gt;
+     *       &amp;lt;/sequence&amp;gt;
+     *       &amp;lt;attribute name="source" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
+     *       &amp;lt;attribute name="version" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
+     *       &amp;lt;attribute name="accessionId" type="{http://www.w3.org/2001/XMLSchema}string" /&amp;gt;
+     *       &amp;lt;attribute name="locus" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" /&amp;gt;
+     *       &amp;lt;attribute name="canonical" type="{http://www.w3.org/2001/XMLSchema}boolean" default="false" /&amp;gt;
+     *     &amp;lt;/restriction&amp;gt;
+     *   &amp;lt;/complexContent&amp;gt;
+     * &amp;lt;/complexType&amp;gt;
+     * &lt;/pre&gt;
      * 
      * 
      */
@@ -186,6 +188,8 @@ public class Sequence
         protected String accessionId;
         @XmlAttribute(name = "locus")
         protected Boolean locus;
+        @XmlAttribute(name = "canonical")
+        protected Boolean canonical;
 
         /**
          * Gets the value of the mapping property.
@@ -311,6 +315,34 @@ public class Sequence
             this.locus = value;
         }
 
+        /**
+         * Gets the value of the canonical property.
+         * 
+         * @return
+         *     possible object is
+         *     {@link Boolean }
+         *     
+         */
+        public boolean isCanonical() {
+            if (canonical == null) {
+                return false;
+            } else {
+                return canonical;
+            }
+        }
+
+        /**
+         * Sets the value of the canonical property.
+         * 
+         * @param value
+         *     allowed object is
+         *     {@link Boolean }
+         *     
+         */
+        public void setCanonical(Boolean value) {
+            this.canonical = value;
+        }
+
     }
 
 }