JAL-1713 update from Jalview 2.11.3 develop

[jalview.git] / src / jalview / xml / binding / jalview / VAMSAS.java

diff --git a/src/jalview/xml/binding/jalview/VAMSAS.java b/src/jalview/xml/binding/jalview/VAMSAS.java
index 932ba3b..d697534 100644 (file)
--- a/src/jalview/xml/binding/jalview/VAMSAS.java
+++ b/src/jalview/xml/binding/jalview/VAMSAS.java
@@ -1,10 +1,11 @@
 //
-// This file was generated by the Eclipse Implementation of JAXB, v2.3.3 
-// See https://eclipse-ee4j.github.io/jaxb-ri 
+// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 
+// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a> 
 // Any modifications to this file will be lost upon recompilation of the source schema. 
-// Generated on: 2021.08.30 at 11:05:22 AM BST 
+// Generated on: 2023.01.31 at 04:07:08 PM GMT 
 //
 
+
 package jalview.xml.binding.jalview;
 
 import java.util.ArrayList;
@@ -14,85 +15,95 @@ import javax.xml.bind.annotation.XmlAccessorType;
 import javax.xml.bind.annotation.XmlElement;
 import javax.xml.bind.annotation.XmlType;
 
+
 /**
- * &lt;p&gt;Java class for VAMSAS complex type.
+ * <p>Java class for VAMSAS complex type.
  * 
- * &lt;p&gt;The following schema fragment specifies the expected content
- * contained within this class.
+ * <p>The following schema fragment specifies the expected content contained within this class.
  * 
- * &lt;pre&gt; &amp;lt;complexType name="VAMSAS"&amp;gt;
- * &amp;lt;complexContent&amp;gt; &amp;lt;restriction
- * base="{http://www.w3.org/2001/XMLSchema}anyType"&amp;gt;
- * &amp;lt;sequence&amp;gt; &amp;lt;element name="Tree"
- * type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded"
- * minOccurs="0"/&amp;gt; &amp;lt;element
- * ref="{www.vamsas.ac.uk/jalview/version2}SequenceSet" maxOccurs="unbounded"
- * minOccurs="0"/&amp;gt; &amp;lt;/sequence&amp;gt; &amp;lt;/restriction&amp;gt;
- * &amp;lt;/complexContent&amp;gt; &amp;lt;/complexType&amp;gt; &lt;/pre&gt;
+ * <pre>
+ * &lt;complexType name="VAMSAS">
+ *   &lt;complexContent>
+ *     &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ *       &lt;sequence>
+ *         &lt;element name="Tree" type="{http://www.w3.org/2001/XMLSchema}string" maxOccurs="unbounded" minOccurs="0"/>
+ *         &lt;element ref="{www.vamsas.ac.uk/jalview/version2}SequenceSet" maxOccurs="unbounded" minOccurs="0"/>
+ *       &lt;/sequence>
+ *     &lt;/restriction>
+ *   &lt;/complexContent>
+ * &lt;/complexType>
+ * </pre>
  * 
  * 
  */
 @XmlAccessorType(XmlAccessType.FIELD)
-@XmlType(name = "VAMSAS", propOrder = { "tree", "sequenceSet" })
-public class VAMSAS
-{
-
-  @XmlElement(name = "Tree")
-  protected List<String> tree;
+@XmlType(name = "VAMSAS", propOrder = {
+    "tree",
+    "sequenceSet"
+})
+public class VAMSAS {
 
-  @XmlElement(name = "SequenceSet")
-  protected List<SequenceSet> sequenceSet;
+    @XmlElement(name = "Tree")
+    protected List<String> tree;
+    @XmlElement(name = "SequenceSet")
+    protected List<SequenceSet> sequenceSet;
 
-  /**
-   * Gets the value of the tree property.
-   * 
-   * &lt;p&gt; This accessor method returns a reference to the live list, not a
-   * snapshot. Therefore any modification you make to the returned list will be
-   * present inside the JAXB object. This is why there is not a
-   * &lt;CODE&gt;set&lt;/CODE&gt; method for the tree property.
-   * 
-   * &lt;p&gt; For example, to add a new item, do as follows: &lt;pre&gt;
-   * getTree().add(newItem); &lt;/pre&gt;
-   * 
-   * 
-   * &lt;p&gt; Objects of the following type(s) are allowed in the list
-   * {@link String }
-   * 
-   * 
-   */
-  public List<String> getTree()
-  {
-    if (tree == null)
-    {
-      tree = new ArrayList<String>();
+    /**
+     * Gets the value of the tree property.
+     * 
+     * <p>
+     * This accessor method returns a reference to the live list,
+     * not a snapshot. Therefore any modification you make to the
+     * returned list will be present inside the JAXB object.
+     * This is why there is not a <CODE>set</CODE> method for the tree property.
+     * 
+     * <p>
+     * For example, to add a new item, do as follows:
+     * <pre>
+     *    getTree().add(newItem);
+     * </pre>
+     * 
+     * 
+     * <p>
+     * Objects of the following type(s) are allowed in the list
+     * {@link String }
+     * 
+     * 
+     */
+    public List<String> getTree() {
+        if (tree == null) {
+            tree = new ArrayList<String>();
+        }
+        return this.tree;
     }
-    return this.tree;
-  }
 
-  /**
-   * Gets the value of the sequenceSet property.
-   * 
-   * &lt;p&gt; This accessor method returns a reference to the live list, not a
-   * snapshot. Therefore any modification you make to the returned list will be
-   * present inside the JAXB object. This is why there is not a
-   * &lt;CODE&gt;set&lt;/CODE&gt; method for the sequenceSet property.
-   * 
-   * &lt;p&gt; For example, to add a new item, do as follows: &lt;pre&gt;
-   * getSequenceSet().add(newItem); &lt;/pre&gt;
-   * 
-   * 
-   * &lt;p&gt; Objects of the following type(s) are allowed in the list
-   * {@link SequenceSet }
-   * 
-   * 
-   */
-  public List<SequenceSet> getSequenceSet()
-  {
-    if (sequenceSet == null)
-    {
-      sequenceSet = new ArrayList<SequenceSet>();
+    /**
+     * Gets the value of the sequenceSet property.
+     * 
+     * <p>
+     * This accessor method returns a reference to the live list,
+     * not a snapshot. Therefore any modification you make to the
+     * returned list will be present inside the JAXB object.
+     * This is why there is not a <CODE>set</CODE> method for the sequenceSet property.
+     * 
+     * <p>
+     * For example, to add a new item, do as follows:
+     * <pre>
+     *    getSequenceSet().add(newItem);
+     * </pre>
+     * 
+     * 
+     * <p>
+     * Objects of the following type(s) are allowed in the list
+     * {@link SequenceSet }
+     * 
+     * 
+     */
+    public List<SequenceSet> getSequenceSet() {
+        if (sequenceSet == null) {
+            sequenceSet = new ArrayList<SequenceSet>();
+        }
+        return this.sequenceSet;
     }
-    return this.sequenceSet;
-  }
 
 }