Merge branch 'features/pca_jaxb_datasetrefs_JAL-3171_JAL-3063_JAL-1767' into develop

[jalview.git] / src / jalview / xml / binding / uniprot / DbReferenceType.java

diff --git a/src/jalview/xml/binding/uniprot/DbReferenceType.java b/src/jalview/xml/binding/uniprot/DbReferenceType.java
new file mode 100644 (file)
index 0000000..184ee40
--- /dev/null
+++ b/src/jalview/xml/binding/uniprot/DbReferenceType.java
@@ -0,0 +1,192 @@
+//
+// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 
+// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a> 
+// Any modifications to this file will be lost upon recompilation of the source schema. 
+// Generated on: 2018.09.13 at 10:18:53 AM BST 
+//
+
+
+package jalview.xml.binding.uniprot;
+
+import java.util.ArrayList;
+import java.util.List;
+import javax.xml.bind.annotation.XmlAccessType;
+import javax.xml.bind.annotation.XmlAccessorType;
+import javax.xml.bind.annotation.XmlAttribute;
+import javax.xml.bind.annotation.XmlType;
+
+
+/**
+ * Describes a database cross-reference.
+ *             Equivalent to the flat file DR-line.
+ *             
+ * 
+ * <p>Java class for dbReferenceType complex type.
+ * 
+ * <p>The following schema fragment specifies the expected content contained within this class.
+ * 
+ * <pre>
+ * &lt;complexType name="dbReferenceType">
+ *   &lt;complexContent>
+ *     &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ *       &lt;sequence>
+ *         &lt;element name="molecule" type="{http://uniprot.org/uniprot}moleculeType" minOccurs="0"/>
+ *         &lt;element name="property" type="{http://uniprot.org/uniprot}propertyType" maxOccurs="unbounded" minOccurs="0"/>
+ *       &lt;/sequence>
+ *       &lt;attribute name="type" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ *       &lt;attribute name="id" use="required" type="{http://www.w3.org/2001/XMLSchema}string" />
+ *       &lt;attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
+ *     &lt;/restriction>
+ *   &lt;/complexContent>
+ * &lt;/complexType>
+ * </pre>
+ * 
+ * 
+ */
+@XmlAccessorType(XmlAccessType.FIELD)
+@XmlType(name = "dbReferenceType", propOrder = {
+    "molecule",
+    "property"
+})
+public class DbReferenceType {
+
+    protected MoleculeType molecule;
+    protected List<PropertyType> property;
+    @XmlAttribute(name = "type", required = true)
+    protected String type;
+    @XmlAttribute(name = "id", required = true)
+    protected String id;
+    @XmlAttribute(name = "evidence")
+    protected List<Integer> evidence;
+
+    /**
+     * Gets the value of the molecule property.
+     * 
+     * @return
+     *     possible object is
+     *     {@link MoleculeType }
+     *     
+     */
+    public MoleculeType getMolecule() {
+        return molecule;
+    }
+
+    /**
+     * Sets the value of the molecule property.
+     * 
+     * @param value
+     *     allowed object is
+     *     {@link MoleculeType }
+     *     
+     */
+    public void setMolecule(MoleculeType value) {
+        this.molecule = value;
+    }
+
+    /**
+     * Gets the value of the property property.
+     * 
+     * <p>
+     * This accessor method returns a reference to the live list,
+     * not a snapshot. Therefore any modification you make to the
+     * returned list will be present inside the JAXB object.
+     * This is why there is not a <CODE>set</CODE> method for the property property.
+     * 
+     * <p>
+     * For example, to add a new item, do as follows:
+     * <pre>
+     *    getProperty().add(newItem);
+     * </pre>
+     * 
+     * 
+     * <p>
+     * Objects of the following type(s) are allowed in the list
+     * {@link PropertyType }
+     * 
+     * 
+     */
+    public List<PropertyType> getProperty() {
+        if (property == null) {
+            property = new ArrayList<PropertyType>();
+        }
+        return this.property;
+    }
+
+    /**
+     * Gets the value of the type property.
+     * 
+     * @return
+     *     possible object is
+     *     {@link String }
+     *     
+     */
+    public String getType() {
+        return type;
+    }
+
+    /**
+     * Sets the value of the type property.
+     * 
+     * @param value
+     *     allowed object is
+     *     {@link String }
+     *     
+     */
+    public void setType(String value) {
+        this.type = value;
+    }
+
+    /**
+     * Gets the value of the id property.
+     * 
+     * @return
+     *     possible object is
+     *     {@link String }
+     *     
+     */
+    public String getId() {
+        return id;
+    }
+
+    /**
+     * Sets the value of the id property.
+     * 
+     * @param value
+     *     allowed object is
+     *     {@link String }
+     *     
+     */
+    public void setId(String value) {
+        this.id = value;
+    }
+
+    /**
+     * Gets the value of the evidence property.
+     * 
+     * <p>
+     * This accessor method returns a reference to the live list,
+     * not a snapshot. Therefore any modification you make to the
+     * returned list will be present inside the JAXB object.
+     * This is why there is not a <CODE>set</CODE> method for the evidence property.
+     * 
+     * <p>
+     * For example, to add a new item, do as follows:
+     * <pre>
+     *    getEvidence().add(newItem);
+     * </pre>
+     * 
+     * 
+     * <p>
+     * Objects of the following type(s) are allowed in the list
+     * {@link Integer }
+     * 
+     * 
+     */
+    public List<Integer> getEvidence() {
+        if (evidence == null) {
+            evidence = new ArrayList<Integer>();
+        }
+        return this.evidence;
+    }
+
+}