JAL-3130 incorporating feature/JAL-3063jaxbNoCastor and new script utils/jdeps_jlink_...

[jalview.git] / src / jalview / xml / binding / uniprot / GeneLocationType.java

diff --git a/src/jalview/xml/binding/uniprot/GeneLocationType.java b/src/jalview/xml/binding/uniprot/GeneLocationType.java
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+++ b/src/jalview/xml/binding/uniprot/GeneLocationType.java
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+//
+// This file was generated by the JavaTM Architecture for XML Binding(JAXB) Reference Implementation, v2.2.8-b130911.1802 
+// See <a href="http://java.sun.com/xml/jaxb">http://java.sun.com/xml/jaxb</a> 
+// Any modifications to this file will be lost upon recompilation of the source schema. 
+// Generated on: 2018.09.13 at 10:18:53 AM BST 
+//
+
+
+package jalview.xml.binding.uniprot;
+
+import java.util.ArrayList;
+import java.util.List;
+import javax.xml.bind.annotation.XmlAccessType;
+import javax.xml.bind.annotation.XmlAccessorType;
+import javax.xml.bind.annotation.XmlAttribute;
+import javax.xml.bind.annotation.XmlType;
+
+
+/**
+ * Describes non-nuclear gene locations (organelles and plasmids).
+ *             Equivalent to the flat file OG-line.
+ * 
+ * <p>Java class for geneLocationType complex type.
+ * 
+ * <p>The following schema fragment specifies the expected content contained within this class.
+ * 
+ * <pre>
+ * &lt;complexType name="geneLocationType">
+ *   &lt;complexContent>
+ *     &lt;restriction base="{http://www.w3.org/2001/XMLSchema}anyType">
+ *       &lt;sequence>
+ *         &lt;element name="name" type="{http://uniprot.org/uniprot}statusType" maxOccurs="unbounded" minOccurs="0"/>
+ *       &lt;/sequence>
+ *       &lt;attribute name="type" use="required">
+ *         &lt;simpleType>
+ *           &lt;restriction base="{http://www.w3.org/2001/XMLSchema}string">
+ *             &lt;enumeration value="apicoplast"/>
+ *             &lt;enumeration value="chloroplast"/>
+ *             &lt;enumeration value="organellar chromatophore"/>
+ *             &lt;enumeration value="cyanelle"/>
+ *             &lt;enumeration value="hydrogenosome"/>
+ *             &lt;enumeration value="mitochondrion"/>
+ *             &lt;enumeration value="non-photosynthetic plastid"/>
+ *             &lt;enumeration value="nucleomorph"/>
+ *             &lt;enumeration value="plasmid"/>
+ *             &lt;enumeration value="plastid"/>
+ *           &lt;/restriction>
+ *         &lt;/simpleType>
+ *       &lt;/attribute>
+ *       &lt;attribute name="evidence" type="{http://uniprot.org/uniprot}intListType" />
+ *     &lt;/restriction>
+ *   &lt;/complexContent>
+ * &lt;/complexType>
+ * </pre>
+ * 
+ * 
+ */
+@XmlAccessorType(XmlAccessType.FIELD)
+@XmlType(name = "geneLocationType", propOrder = {
+    "name"
+})
+public class GeneLocationType {
+
+    protected List<StatusType> name;
+    @XmlAttribute(name = "type", required = true)
+    protected String type;
+    @XmlAttribute(name = "evidence")
+    protected List<Integer> evidence;
+
+    /**
+     * Gets the value of the name property.
+     * 
+     * <p>
+     * This accessor method returns a reference to the live list,
+     * not a snapshot. Therefore any modification you make to the
+     * returned list will be present inside the JAXB object.
+     * This is why there is not a <CODE>set</CODE> method for the name property.
+     * 
+     * <p>
+     * For example, to add a new item, do as follows:
+     * <pre>
+     *    getName().add(newItem);
+     * </pre>
+     * 
+     * 
+     * <p>
+     * Objects of the following type(s) are allowed in the list
+     * {@link StatusType }
+     * 
+     * 
+     */
+    public List<StatusType> getName() {
+        if (name == null) {
+            name = new ArrayList<StatusType>();
+        }
+        return this.name;
+    }
+
+    /**
+     * Gets the value of the type property.
+     * 
+     * @return
+     *     possible object is
+     *     {@link String }
+     *     
+     */
+    public String getType() {
+        return type;
+    }
+
+    /**
+     * Sets the value of the type property.
+     * 
+     * @param value
+     *     allowed object is
+     *     {@link String }
+     *     
+     */
+    public void setType(String value) {
+        this.type = value;
+    }
+
+    /**
+     * Gets the value of the evidence property.
+     * 
+     * <p>
+     * This accessor method returns a reference to the live list,
+     * not a snapshot. Therefore any modification you make to the
+     * returned list will be present inside the JAXB object.
+     * This is why there is not a <CODE>set</CODE> method for the evidence property.
+     * 
+     * <p>
+     * For example, to add a new item, do as follows:
+     * <pre>
+     *    getEvidence().add(newItem);
+     * </pre>
+     * 
+     * 
+     * <p>
+     * Objects of the following type(s) are allowed in the list
+     * {@link Integer }
+     * 
+     * 
+     */
+    public List<Integer> getEvidence() {
+        if (evidence == null) {
+            evidence = new ArrayList<Integer>();
+        }
+        return this.evidence;
+    }
+
+}